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V. Shahrezaei · SciRah

Researcher profile · Semantic Scholar

V. Shahrezaei

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V. Shahrezaei — researcher profile on SciRah

h-index: 28
Works: 77
Citations: 3,324

Most-cited papers

Analytical distributions for stochastic gene expression
V. Shahrezaei, P. Swain
2008Proceedings of the National Academy of Sciences of the United States of America826 citations Open access
Semantic Scholar
Colored extrinsic fluctuations and stochastic gene expression
V. Shahrezaei, Julien F. Ollivier, P. Swain
2008Molecular Systems Biology275 citations Open access
Semantic Scholar
The stochastic nature of biochemical networks.
V. Shahrezaei, P. Swain
2008Current Opinion in Biotechnology235 citations
Semantic Scholar
The scaffold protein Ste5 directly controls a switch-like mating decision in yeast
Mohan Malleshaiah, V. Shahrezaei, P. Swain, S. Michnick
2010Nature191 citations
Semantic Scholar
Competition between Phasic and Asynchronous Release for Recovered Synaptic Vesicles at Developing Hippocampal Autaptic Synapses
Y. Otsu, V. Shahrezaei, Bo Li, L. Raymond +2 more
2004Journal of Neuroscience170 citations Open access
Semantic Scholar
bayNorm: Bayesian gene expression recovery, imputation and normalization for single-cell RNA-sequencing data
Wenhao Tang, F. Bertaux, Philipp Thomas, C. Stefanelli +3 more
2018bioRxiv110 citations Open access
Semantic Scholar
Size-dependent increase in RNA Polymerase II initiation rates mediates gene expression scaling with cell size
Xi-Ming Sun, Anthony Bowman, Miles Priestman, F. Bertaux +6 more
2019bioRxiv102 citations Open access
Semantic Scholar
Cell Division Site Placement and Asymmetric Growth in Mycobacteria
G. Joyce, K. Williams, Matthew L. Robb, Elke E. E. Noens +3 more
2012PLoS ONE101 citations Open access
Semantic Scholar
Heterogeneity of Striatal Dopamine Function in Schizophrenia: Meta-analysis of Variance.
S. Brugger, Ilinca Angelescu, A. Abi-Dargham, R. Mizrahi +2 more
2020Biological Psychiatry100 citations Open access
Semantic Scholar
Ca2+ from One or Two Channels Controls Fusion of a Single Vesicle at the Frog Neuromuscular Junction
V. Shahrezaei, Alex Cao, K. Delaney
2006Journal of Neuroscience81 citations Open access
Semantic Scholar
Connecting growth with gene expression: of noise and numbers.
V. Shahrezaei, S. Marguerat
2015Current Opinion in Microbiology71 citations Open access
Semantic Scholar
Integrating multi-OMICS data through sparse canonical correlation analysis for the prediction of complex traits: a comparison study
Theodoulos Rodosthenous, V. Shahrezaei, Marina Evangelou
2020Bioinform.61 citations Open access
Semantic Scholar
Single-cell imaging and RNA sequencing reveal patterns of gene expression heterogeneity during fission yeast growth and adaptation
Malika Saint, F. Bertaux, Wenhao Tang, Xi-Ming Sun +5 more
2019Nature Microbiology59 citations Open access
Semantic Scholar
Mycobacteria Modify Their Cell Size Control under Sub-Optimal Carbon Sources
Miles Priestman, Philipp Thomas, B. Robertson, V. Shahrezaei
2017Front. Cell Dev. Biol.56 citations Open access
Semantic Scholar
Consequences of molecular-level Ca2+ channel and synaptic vesicle colocalization for the Ca2+ microdomain and neurotransmitter exocytosis: a monte carlo study.
V. Shahrezaei, K. Delaney
2004Biophysical Journal56 citations Open access
Semantic Scholar
Ultrasensitivity in multisite phosphorylation of membrane-anchored proteins.
Omer Dushek, P. Anton van der Merwe, V. Shahrezaei
2011Biophysical Journal54 citations Open access
Semantic Scholar
Scalable Rule-Based Modelling of Allosteric Proteins and Biochemical Networks
Julien F. Ollivier, V. Shahrezaei, P. Swain
2010PLoS Comput. Biol.54 citations Open access
Semantic Scholar
Epimutations driven by small RNAs arise frequently but most have limited duration in Caenorhabditis elegans
T. Beltran, V. Shahrezaei, Vaishali Katju, P. Sarkies
2020Nature Ecology & Evolution49 citations
Semantic Scholar
Modelling capture efficiency of single-cell RNA-sequencing data improves inference of transcriptome-wide burst kinetics
Wenhao Tang, A. C. S. Jørgensen, S. Marguerat, Philipp Thomas +1 more
2023bioRxiv42 citations Open access
Semantic Scholar
MALDI-TOF mass spectrometry on intact bacteria combined with a refined analysis framework allows accurate classification of MSSA and MRSA
Wenhao Tang, Nisha Ranganathan, V. Shahrezaei, G. Larrouy-Maumus
2019PLoS ONE42 citations Open access
Semantic Scholar
Selective advantage of epigenetically disrupted cancer cells via phenotypic inertia.
Ioannis Loukas, Fabrizio Simeoni, M. Milan, P. Inglese +11 more
2022Cancer Cell41 citations Open access
Semantic Scholar
Coordination of gene expression noise with cell size: analytical results for agent-based models of growing cell populations
Philipp Thomas, V. Shahrezaei
2021Journal of the Royal Society Interface39 citations Open access
Semantic Scholar
Division rate, cell size and proteome allocation: impact on gene expression noise and implications for the dynamics of genetic circuits
F. Bertaux, S. Marguerat, V. Shahrezaei
2018Royal Society Open Science39 citations Open access
Semantic Scholar
A bacterial size law revealed by a coarse-grained model of cell physiology
F. Bertaux, Julius von Kügelgen, S. Marguerat, V. Shahrezaei
2020PLoS Comput. Biol.38 citations Open access
Semantic Scholar
General transient solution of the one-step master equation in one dimension.
Stephen Smith, V. Shahrezaei
2015Physical review. E, Statistical, nonlinear, and soft matter physics35 citations Open access
Semantic Scholar
Brevity of the Ca2+ microdomain and active zone geometry prevent Ca2+-sensor saturation for neurotransmitter release.
V. Shahrezaei, K. Delaney
2005Journal of Neurophysiology34 citations
Semantic Scholar
Efficient Bayesian inference for stochastic agent-based models
A. C. S. Jørgensen, Atiyo Ghosh, M. Sturrock, V. Shahrezaei
2022PLoS Comput. Biol.32 citations Open access
Semantic Scholar
LiBiNorm: an htseq-count analogue with improved normalisation of Smart-seq2 data and library preparation diagnostics
Nigel P. Dyer, V. Shahrezaei, Daniel Hebenstreit
2019PeerJ29 citations Open access
Semantic Scholar
Modeling Enzyme Processivity Reveals that RNA-Seq Libraries Are Biased in Characteristic and Correctable Ways
Nathan Archer, Mark Walsh, V. Shahrezaei, Daniel Hebenstreit
2016Cell Systems24 citations Open access
Semantic Scholar
Discrimination of bovine milk from non-dairy milk by lipids fingerprinting using routine matrix-assisted laser desorption ionization mass spectrometry
P. England, Wenhao Tang, M. Kostrzewa, V. Shahrezaei +1 more
2020Scientific Reports23 citations Open access
Semantic Scholar
Discrimination of Escherichia coli, Shigella flexneri, and Shigella sonnei using lipid profiling by MALDI‐TOF mass spectrometry paired with machine learning
Jade Pizzato, Wenhao Tang, S. Bernabeu, R. Bonnin +10 more
2022MicrobiologyOpen22 citations Open access
Semantic Scholar
Stochastic Cellular Fate Decision Making by Multiple Infecting Lambda Phage
Matthew L. Robb, V. Shahrezaei
2014PLoS ONE19 citations Open access
Semantic Scholar
Global transcription regulation revealed from dynamical correlations in time-resolved single-cell RNA-sequencing
Dimitris Volteras, V. Shahrezaei, P. Thomas
2024bioRxiv17 citations Open access
Semantic Scholar
Bell-shaped and ultrasensitive dose-response in phosphorylation-dephosphorylation cycles: the role of kinase-phosphatase complex formation
B. Szomolay, V. Shahrezaei
2012BMC Systems Biology17 citations Open access
Semantic Scholar
STABILITY OF PREFERABLE STRUCTURES FOR A HYDROPHOBIC-POLAR MODEL OF PROTEIN FOLDING
M. Ejtehadi, N. Hamedani, Hamed Seyed-allaei, V. Shahrezaei +1 more
199817 citations
Semantic Scholar
The influence of nuclear compartmentalisation on stochastic dynamics of self-repressing gene expression.
M. Sturrock, ShiYu Li, V. Shahrezaei
2017Journal of Theoretical Biology16 citations Open access
Semantic Scholar
Multi-view data visualisation via manifold learning
Theodoulos Rodosthenous, V. Shahrezaei, Marina Evangelou
2021PeerJ Computer Science14 citations Open access
Semantic Scholar
Data-driven spatio-temporal modelling of glioblastoma
A. C. S. Jørgensen, C. Hill, M. Sturrock, Wenhao Tang +6 more
2022Royal Society Open Science11 citations Open access
Semantic Scholar
Mycobacterial Growth.
Iria Uhía, K. Williams, V. Shahrezaei, B. Robertson
2015Cold Spring Harbor Perspectives in Medicine11 citations Open access
Semantic Scholar
Growth-rate-dependent and nutrient-specific gene expression resource allocation in fission yeast
I. T. Kleijn, Amalia Martínez-Segura, F. Bertaux, Malika Saint +3 more
2021Life Science Alliance10 citations Open access
Semantic Scholar
Phenotypic Robustness of Epidermal Stem Cell Number in C. elegans Is Modulated by the Activity of the Conserved N-acetyltransferase nath-10/NAT10
Mark Hintze, D. Katsanos, V. Shahrezaei, M. Barkoulas
2021Frontiers in Cell and Developmental Biology10 citations Open access
Semantic Scholar
Coordination of gene expression noise with cell size: extrinsic noise versus agent-based models of growing cell populations
Philipp Thomas, V. Shahrezaei
2020bioRxiv9 citations Open access
Semantic Scholar
Modelling the Influence of Foot-and-Mouth Disease Vaccine Antigen Stability and Dose on the Bovine Immune Response
D. Schley, R. Tanaka, K. Leungchavaphongse, V. Shahrezaei +4 more
2012PLoS ONE8 citations Open access
Semantic Scholar
Emergent expression of fitness-conferring genes by phenotypic selection
M. Ciechonska, M. Sturrock, Alice Grob, G. Larrouy-Maumus +2 more
2022PNAS Nexus7 citations Open access
Semantic Scholar
An ISR-independent role of GCN2 prevents excessive ribosome biogenesis and mRNA translation
M. Román-Trufero, I. T. Kleijn, Kevin Blighe, Jinglin Zhou +15 more
2025Life Science Alliance6 citations Open access
Semantic Scholar
Forecasting the adoption and spread of a community-based marine management initiative using agent-based models
A. C. S. Jørgensen, T. Pienkowski, Matt Clark, M. Dunn +10 more
2024bioRxiv6 citations Open access
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Fission yeast obeys a linear size law under nutrient titration
F. Bertaux, I. T. Kleijn, S. Marguerat, V. Shahrezaei
2023bioRxiv6 citations
Semantic Scholar
Benchmarking imputation methods for network inference using a novel method of synthetic scRNA-seq data generation
Ayoub Lasri, V. Shahrezaei, M. Sturrock
2021BMC Bioinformatics6 citations Open access
Semantic Scholar
Analysis of ParAB dynamics in mycobacteria shows active movement of ParB and differential inheritance of ParA
Iria Uhía, Miles Priestman, G. Joyce, Nitya Krishnan +2 more
2018PLoS ONE6 citations Open access
Semantic Scholar
A unified coarse-grained theory of bacterial physiology explains the relationship between cell size, growth rate and pro-teome composition under various growth limitations
F. Bertaux, Julius von Kügelgen, S. Marguerat, V. Shahrezaei
2016bioRxiv6 citations Open access
Semantic Scholar

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