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K. Denby · SciRah

Researcher profile · Semantic Scholar

K. Denby

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K. Denby — researcher profile on SciRah

h-index: 39
Works: 91
Citations: 6,347

Most-cited papers

High-Resolution Temporal Profiling of Transcripts during Arabidopsis Leaf Senescence Reveals a Distinct Chronology of Processes and Regulation[C][W][OA]
E. Breeze, E. Harrison, Stuart McHattie, L. Hughes +21 more
2011The Plant Cell830 citations Open access
Semantic Scholar
Arabidopsis Defense against Botrytis cinerea: Chronology and Regulation Deciphered by High-Resolution Temporal Transcriptomic Analysis[C][W][OA]
Oliver P. F. Windram, P. Madhou, Stuart McHattie, Claire Hill +25 more
2012The Plant Cell357 citations Open access
Semantic Scholar
Carbon Catabolite Repression Regulates Glyoxylate Cycle Gene Expression in Cucumber.
I. Graham, K. Denby, C. Leaver
1994The Plant Cell321 citations Open access
Semantic Scholar
Secondary metabolites influence Arabidopsis/Botrytis interactions: variation in host production and pathogen sensitivity.
D. Kliebenstein, H. Rowe, K. Denby
2005The Plant Journal283 citations
Semantic Scholar
Standards for plant synthetic biology: a common syntax for exchange of DNA parts.
N. Patron, D. Orzáez, S. Marillonnet, H. Warzecha +54 more
2015New Phytologist272 citations Open access
Semantic Scholar
MEDIATOR25 Acts as an Integrative Hub for the Regulation of Jasmonate-Responsive Gene Expression in Arabidopsis1[C][W]
V. Çevik, Brendan N. Kidd, Pei-Jun Zhang, Claire Hill +8 more
2012Plant Physiology235 citations Open access
Semantic Scholar
Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network[OPEN]
Richard Hickman, M. V. Van Verk, A. V. van Dijken, M. P. Mendes +13 more
2016The Plant Cell233 citations Open access
Semantic Scholar
A local regulatory network around three NAC transcription factors in stress responses and senescence in Arabidopsis leaves
Richard Hickman, Claire Hill, Christopher A. Penfold, E. Breeze +12 more
2013The Plant Journal210 citations Open access
Semantic Scholar
Salt and osmotic stress cause rapid increases in Arabidopsis thaliana cGMP levels
Lara Donaldson, N. Ludidi, Marc R. Knight, C. Gehring +1 more
2004FEBS Letters191 citations Open access
Semantic Scholar
Identification of Botrytis cinerea susceptibility loci in Arabidopsis thaliana.
K. Denby, Pavan Kumar, D. Kliebenstein
2004The Plant Journal191 citations Open access
Semantic Scholar
The Signature of Seeds in Resurrection Plants: A Molecular and Physiological Comparison of Desiccation Tolerance in Seeds and Vegetative Tissues1
N. Illing, K. Denby, H. Collett, A. Shen +1 more
2005Integrative and Comparative Biology179 citations Open access
Semantic Scholar
Basal resistance against Pseudomonas syringae in Arabidopsis involves WRKY53 and a protein with homology to a nematode resistance protein.
S. Murray, R. Ingle, L. Petersen, K. Denby
2007Molecular Plant-Microbe Interactions171 citations
Semantic Scholar
Engineering drought and salinity tolerance in plants: lessons from genome-wide expression profiling in Arabidopsis.
K. Denby, C. Gehring
2005Trends in Biotechnology166 citations
Semantic Scholar
Granger causality vs. dynamic Bayesian network inference: a comparative study
Cun-Lu Zou, K. Denby, Jianfeng Feng
2009BMC Bioinformatics164 citations Open access
Semantic Scholar
PAMP recognition and the plant–pathogen arms race
R. Ingle, M. Carstens, K. Denby
2006Bioessays151 citations
Semantic Scholar
Transcriptional Dynamics Driving MAMP-Triggered Immunity and Pathogen Effector-Mediated Immunosuppression in Arabidopsis Leaves Following Infection with Pseudomonas syringae pv tomato DC3000[OPEN]
Laura A. Lewis, K. Polański, M. de Torres Zabala, S. Jayaraman +21 more
2015The Plant Cell140 citations Open access
Semantic Scholar
The Regenerative Lens: A conceptual framework for regenerative social-ecological systems
Sam J. Buckton, I. Fazey, B. Sharpe, E. S. Om +21 more
2023One Earth116 citations Open access
Semantic Scholar
Time-Series Transcriptomics Reveals That AGAMOUS-LIKE22 Affects Primary Metabolism and Developmental Processes in Drought-Stressed Arabidopsis[CC-BY]
U. Bechtold, Christopher A. Penfold, Dafyd J. Jenkins, Roxane A. Legaie +25 more
2016The Plant Cell114 citations Open access
Semantic Scholar
A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Series
O. Stegle, K. Denby, Emma J. Cooke, D. L. Wild +2 more
2009Annual International Conference on Research in Computational Molecular Biology107 citations Open access
Semantic Scholar
Jasmonate signalling drives time‐of‐day differences in susceptibility of Arabidopsis to the fungal pathogen Botrytis cinerea
R. Ingle, C. Stoker, W. Stone, N. Adams +5 more
2015The Plant Journal102 citations Open access
Semantic Scholar
A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis
Run-Xuan Zhang, R. Kuo, Max Coulter, C. Calixto +35 more
2021Genome Biology100 citations Open access
Semantic Scholar
Metabolomic approaches reveal that cell wall modifications play a major role in ethylene-mediated resistance against Botrytis cinerea.
A. Lloyd, J. Allwood, C. Winder, W. Dunn +9 more
2011The Plant Journal91 citations Open access
Semantic Scholar
Towards transcript profiling of desiccation tolerance in Xerophyta humilis: Construction of a normalized 11 k X. humilis cDNA set and microarray expression analysis of 424 cDNAs in response to dehydration
H. Collett, A. Shen, Michael Gardner, J. Farrant +2 more
200491 citations
Semantic Scholar
Citation for Published Item: Use Policy Oxi1 Protein Kinase Is Required for Plant Immunity against Pseudomonas Syringae in Arabidopsis
L. Petersen, R. Ingle, M. Knight, K. Denby +4 more
84 citations
Semantic Scholar
A Molecular Signal Integration Network Underpinning Arabidopsis Seed Germination
Hao Xu, Ourania Lantzouni, Tonko Bruggink, René Benjamins +4 more
2020Current Biology79 citations Open access
Semantic Scholar
Reassess the t Test: Interact with All Your Data via ANOVA
S. Brady, M. Burow, W. Busch, Ö. Carlborg +8 more
2015The Plant Cell63 citations Open access
Semantic Scholar
R/BHC: fast Bayesian hierarchical clustering for microarray data
R. Savage, K. Heller, Yang Xu, Zoubin Ghahramani +4 more
2009BMC Bioinformatics62 citations Open access
Semantic Scholar
The mechanism of a formaldehyde-sensing transcriptional regulator
K. Denby, J. Iwig, C. Bisson, Jodie Westwood +7 more
2016Scientific Reports60 citations Open access
Semantic Scholar
Bringing numerous methods for expression and promoter analysis to a public cloud computing service
K. Polański, Bo Gao, Sam Mason, Paul E. Brown +3 more
2017Bioinform.59 citations Open access
Semantic Scholar
Nonparametric Bayesian inference for perturbed and orthologous gene regulatory networks
Christopher A. Penfold, V. Buchanan-Wollaston, K. Denby, D. L. Wild
2012Bioinform.58 citations Open access
Semantic Scholar
Temporal clustering by affinity propagation reveals transcriptional modules in Arabidopsis thaliana
S. Kiddle, Oliver P. F. Windram, Stuart McHattie, A. Mead +4 more
2010Bioinform.55 citations Open access
Semantic Scholar
Whole genome resequencing of Botrytis cinerea isolates identifies high levels of standing diversity
S. Atwell, Jason A. Corwin, N. Soltis, Anushryia Subedy +2 more
2015Frontiers in Microbiology52 citations Open access
Semantic Scholar
A chromosome-level Amaranthus cruentus genome assembly highlights gene family evolution and biosynthetic gene clusters that may underpin the nutritional value of this traditional crop.
Xiao Ma, Fabián E. Vaistij, Yi Li, W. S. Jansen van Rensburg +9 more
2021The Plant Journal50 citations Open access
Semantic Scholar
Spatial and temporal transcriptomic analysis of the Arabidopsis thaliana–Botrytis cinerea interaction
Joseph M. K. Mulema, K. Denby
2011Molecular Biology Reports47 citations
Semantic Scholar
Conserved Noncoding Sequences Highlight Shared Components of Regulatory Networks in Dicotyledonous Plants[W][OA]
L. Baxter, Aleksey Jironkin, Richard Hickman, Jay Moore +8 more
2012The Plant Cell46 citations Open access
Semantic Scholar
Downy Mildew effector HaRxL21 interacts with the transcriptional repressor TOPLESS to promote pathogen susceptibility
Sarah E Harvey, P. Kumari, D. Lapin, Thomas Griebel +7 more
2020bioRxiv43 citations Open access
Semantic Scholar
Insect Gallers and Their Plant Hosts: From Omics Data to Systems Biology
C. Oates, K. Denby, A. Myburg, B. Slippers +1 more
2016International Journal of Molecular Sciences40 citations Open access
Semantic Scholar
Network modeling to understand plant immunity.
Oliver P. F. Windram, Christopher A. Penfold, K. Denby
2014Annual Review of Phytopathology40 citations
Semantic Scholar
Inferring the time-invariant topology of a nonlinear sparse gene regulatory network using fully Bayesian spline autoregression.
Edward R. Morrissey, Miguel A. Juárez, K. Denby, N. Burroughs
2011Biostatistics37 citations
Semantic Scholar
Constitutive expression of a grapevine polygalacturonase-inhibiting protein affects gene expression and cell wall properties in uninfected tobacco
Erik Alexandersson, J. Becker, Dan Jacobson, E. Nguema-Ona +3 more
2011BMC Research Notes36 citations Open access
Semantic Scholar
ups1, an Arabidopsis thaliana camalexin accumulation mutant defective in multiple defence signalling pathways.
K. Denby, L. J. M. Jason, S. Murray, R. Last
2005The Plant Journal35 citations Open access
Semantic Scholar
Transcriptional Dynamics of the Salicylic Acid Response and its Interplay with the Jasmonic Acid Pathway
Richard Hickman, M. P. Mendes, M. V. Van Verk, A. V. van Dijken +4 more
2019bioRxiv33 citations Open access
Semantic Scholar
Modelling signaling networks underlying plant defence.
Oliver P. F. Windram, K. Denby
2015Current opinion in plant biology32 citations Open access
Semantic Scholar
Exploiting breakdown in nonhost effector–target interactions to boost host disease resistance
H. McLellan, Sarah E Harvey, J. Steinbrenner, M. Armstrong +19 more
2022Proceedings of the National Academy of Sciences of the United States of America30 citations Open access
Semantic Scholar
Wigwams: identifying gene modules co-regulated across multiple biological conditions
K. Polański, Johanna Rhodes, Claire Hill, Pei-Jun Zhang +7 more
2013Bioinform.30 citations Open access
Semantic Scholar
Gene-for-gene tolerance to bacterial wilt in Arabidopsis.
L. E. Van der Linden, J. Bredenkamp, S. Naidoo, Joanne Fouché-Weich +4 more
2013Molecular Plant-Microbe Interactions28 citations Open access
Semantic Scholar
MEDIATOR 25 Acts as an Integrative Hub for the Regulation of Jasmonate-Responsive Gene Expression in Arabidopsis 1 [ C ] [ W ]
V. Çevik, Brendan N. Kidd, Pei-Jun Zhang, Claire Hill +8 more
201228 citations
Semantic Scholar
Time series transcriptomics reveals a BBX32-directed control of acclimation to high light in mature Arabidopsis leaves.
R. Alvarez-Fernandez, Christopher A. Penfold, G. Gálvez-Valdivieso, Marino Exposito-Rodriguez +13 more
2021The Plant Journal27 citations Open access
Semantic Scholar
Addressing the threat of climate change to agriculture requires improving crop resilience to short-term abiotic stress
A. Beacham, P. Hand, G. Barker, K. Denby +3 more
2018Outlook on Agriculture23 citations Open access
Semantic Scholar
Plant responses and adaptations to a changing climate.
J. Cushman, K. Denby, R. Mittler
2022The Plant Journal20 citations
Semantic Scholar

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J. Beynon×13
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D. L. Wild×10
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Claire Hill — researcher profile on SciRah

Christopher A. Penfold×8

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A. Mead — researcher profile on SciRah

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