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J. Kissinger · SciRah

Researcher profile · Semantic Scholar

J. Kissinger

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J. Kissinger — researcher profile on SciRah

h-index: 56
Works: 199
Citations: 20K

Most-cited papers

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
Yu-Peng Wang, Hai-Bao Tang, J. DeBarry, Xu Tan +8 more
2012Nucleic Acids Research6,255 citations Open access
Semantic Scholar
VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center
Beatrice Amos, C. Aurrecoechea, Matthieu Barba, Ana Barreto +62 more
2021Nucleic Acids Res.393 citations Open access
Semantic Scholar
FungiDB: An Integrated Bioinformatic Resource for Fungi and Oomycetes
E. Basenko, Jane A. Pulman, A. Shanmugasundram, O. Harb +8 more
2018Journal of Fungi330 citations Open access
Semantic Scholar
Local admixture of amplified and diversified secreted pathogenesis determinants shapes mosaic Toxoplasma gondii genomes
H. Lorenzi, A. Khan, M. Behnke, S. Namasivayam +28 more
2016Nature Communications256 citations Open access
Semantic Scholar
EuPathDB: the eukaryotic pathogen genomics database resource
C. Aurrecoechea, Ana Barreto, E. Basenko, John E. Brestelli +26 more
2016Nucleic Acids Res.252 citations Open access
Semantic Scholar
VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center in 2023
Jorge Alvarez-Jarreta, Beatrice Amos, C. Aurrecoechea, Saikou Y. Bah +57 more
2023Nucleic Acids Research219 citations Open access
Semantic Scholar
TriTrypDB: An integrated functional genomics resource for kinetoplastida
A. Shanmugasundram, D. Starns, Ulrike Böhme, Beatrice Amos +8 more
2023PLoS Neglected Tropical Diseases104 citations Open access
Semantic Scholar
A Genetically Tractable, Natural Mouse Model of Cryptosporidiosis Offers Insights into Host Protective Immunity
Adam Sateriale, J. Šlapeta, R. Baptista, J. Engiles +7 more
2019Cell Host and Microbe94 citations Open access
Semantic Scholar
EuPathDB: The Eukaryotic Pathogen database
C. Aurrecoechea, Ana Barreto, John E. Brestelli, B. Brunk +21 more
2012Nucleic Acids Res.93 citations Open access
Semantic Scholar
Strain-specific genome evolution in Trypanosoma cruzi, the agent of Chagas disease
Wei Wang, Duo Peng, R. Baptista, Yi-Ran Li +2 more
2020bioRxiv79 citations Open access
Semantic Scholar
Systems-Based Analysis of the Sarcocystis neurona Genome Identifies Pathways That Contribute to a Heteroxenous Life Cycle
T. Blazejewski, Nirvana Nursimulu, V. Pszenny, S. Dangoudoubiyam +15 more
2015mBio75 citations Open access
Semantic Scholar
Real-Time Loop-Mediated Isothermal Amplification (RealAmp) for the Species-Specific Identification of Plasmodium vivax
Jaymin C. Patel, Jenna Oberstaller, Maniphet V. Xayavong, Jothikumar Narayanan +10 more
2013PLoS ONE75 citations Open access
Semantic Scholar
The Genome of Haemoproteus tartakovskyi and Its Relationship to Human Malaria Parasites
S. Bensch, B. Canbäck, J. DeBarry, T. Johansson +5 more
2016Genome Biology and Evolution69 citations Open access
Semantic Scholar
MicrobiomeDB: a systems biology platform for integrating, mining and analyzing microbiome experiments
F. S. Oliveira, John E. Brestelli, Shon Cade, Jie Zheng +9 more
2017bioRxiv59 citations Open access
Semantic Scholar
A New Single-Step PCR Assay for the Detection of the Zoonotic Malaria Parasite Plasmodium knowlesi
N. Lucchi, Mitra Poorak, Jenna Oberstaller, J. DeBarry +8 more
2012PLoS ONE57 citations Open access
Semantic Scholar
Long-read assembly and comparative evidence-based reanalysis of Cryptosporidium genome sequences reveal expanded transporter repertoire and duplication of entire chromosome ends including subtelomeric regions
R. Baptista, Yi-Ran Li, Adam Sateriale, M. Sanders +14 more
2021Genome Research54 citations Open access
Semantic Scholar
EuPathDB: the eukaryotic pathogen genomics database resource
Susanne Warrenfeltz, E. Basenko, K. Crouch, O. Harb +4 more
2018Methods in molecular biology54 citations Open access
Semantic Scholar
Distinct amino acid and lipid perturbations characterize acute versus chronic malaria.
R. Cordy, Rapatbhorn Patrapuvich, L. Lili, Mónica Cabrera-Mora +25 more
2019JCI Insight53 citations Open access
Semantic Scholar
Plasmodium cynomolgi infections in rhesus macaques display clinical and parasitological features pertinent to modelling vivax malaria pathology and relapse infections
C. Joyner, A. Moreno, E. Meyer, Mónica Cabrera-Mora +27 more
2016Malaria Journal52 citations Open access
Semantic Scholar
The Cryptosporidium parvum ApiAP2 gene family: insights into the evolution of apicomplexan AP2 regulatory systems
Jenna Oberstaller, Yoanna S. Pumpalova, Ariel Schieler, M. Llinás +1 more
2014Nucleic Acids Research49 citations Open access
Semantic Scholar
Update on Cryptosporidium spp.: highlights from the Seventh International Giardia and Cryptosporidium Conference
G. Widmer, D. Carmena, M. Kváč, R. Chalmers +8 more
2020Parasite46 citations Open access
Semantic Scholar
Peer Review #2 of "Genome-wide identification and expression analysis of the WRKY genes in sugar beet (Beta vulgaris L.) under alkaline stress (v0.1)"
Guo-Qiang Wu, Zhi-Qiang Li, Han Cao, Jin-Long Wang +346 more
201946 citations Open access
Semantic Scholar
What is new in FungiDB: a web-based bioinformatics platform for omics-scale data analysis for fungal and oomycete species
E. Basenko, A. Shanmugasundram, Ulrike Böhme, D. Starns +10 more
2024Genetics45 citations Open access
Semantic Scholar
SchistoDB: an updated genome resource for the three key schistosomes of humans
A. Zerlotini, Eric Aguiar, Fu-Dong Yu, Hua-Yong Xu +8 more
2012Nucleic Acids Res.43 citations Open access
Semantic Scholar
Peer Review #1 of "Genome-wide analysis of growth-regulating factors (GRFs) in Triticum aestivum (v0.1)"
Wen-Di Huang, Yi-Qin He, Lei Y. Yang, Chen Lu +472 more
202142 citations Open access
Semantic Scholar
Non-coding RNAs in apicomplexan parasites: an update
Yi-Ran Li, R. Baptista, J. Kissinger
2020Trends in Parasitology41 citations Open access
Semantic Scholar
PacBio assembly of a Plasmodium knowlesi genome sequence with Hi-C correction and manual annotation of the SICAvar gene family
S. Lapp, J. A. Geraldo, Jung-Ting Chien, F. Ay +7 more
2017Parasitology41 citations Open access
Semantic Scholar
A novel fragmented mitochondrial genome in the protist pathogen Toxoplasma gondii and related tissue coccidia
S. Namasivayam, R. Baptista, Wenyuan Xiao, Erica M. Hall +3 more
2020bioRxiv38 citations Open access
Semantic Scholar
Standardized Metadata for Human Pathogen/Vector Genomic Sequences
V. Dugan, S. Emrich, Gloria I. Giraldo-Calderón, O. Harb +54 more
2014PLoS ONE38 citations Open access
Semantic Scholar
Annotated draft genome sequences of three species of Cryptosporidium: Cryptosporidium meleagridis isolate UKMEL1, C. baileyi isolate TAMU-09Q1 and C. hominis isolates TU502_2012 and UKH1
Olukemi O. Ifeonu, M. Chibucos, J. Orvis, Qi Su +11 more
2016Pathogens and Disease37 citations Open access
Semantic Scholar
Metabolomics in the fight against malaria
Jorge L. Salinas, J. Kissinger, Dean P. Jones, M. Galinski
2014Memórias do Instituto Oswaldo Cruz37 citations Open access
Semantic Scholar
ClinEpiDB: an open-access clinical epidemiology database resource encouraging online exploration of complex studies
Emmanuel Ruhamyankaka, B. Brunk, G. Dorsey, O. Harb +9 more
2019Gates Open Research34 citations Open access
Semantic Scholar
High-Quality Genome Assembly and Annotation for Plasmodium coatneyi, Generated Using Single-Molecule Real-Time PacBio Technology
Jung-Ting Chien, S. Pakala, J. A. Geraldo, S. Lapp +4 more
2016Genome Announcements34 citations Open access
Semantic Scholar
Neglected Tropical Diseases in the Post-Genomic Era.
C. Buscaglia, J. Kissinger, Fernán Agüero
2015Trends in Genetics33 citations Open access
Semantic Scholar
Assembly of highly repetitive genomes using short reads: the genome of discrete typing unit III Trypanosoma cruzi strain 231
R. Baptista, J. Reis-Cunha, J. DeBarry, E. Chiari +3 more
2018Microbial Genomics32 citations Open access
Semantic Scholar
Analysis of Long Non-Coding RNA in Cryptosporidium parvum Reveals Significant Stage-Specific Antisense Transcription
Yi-Ran Li, R. Baptista, Adam Sateriale, B. Striepen +1 more
2021Frontiers in Cellular and Infection Microbiology31 citations Open access
Semantic Scholar
Humoral immunity prevents clinical malaria during Plasmodium relapses without eliminating gametocytes
C. Joyner, C. F. Brito, Celia L. Saney, Regina Joice Cordy +12 more
2019PLoS Pathogens30 citations Open access
Semantic Scholar
A 43-Nucleotide U-rich Element in 3′-Untranslated Region of Large Number of Trypanosoma cruzi Transcripts Is Important for mRNA Abundance in Intracellular Amastigotes*
Zhu-Hong Li, Javier G. De Gaudenzi, V. E. Alvarez, Nicolás Mendiondo +4 more
2012Journal of Biological Chemistry29 citations Open access
Semantic Scholar
A Glycosylphosphatidylinositol-Anchored Carbonic Anhydrase-Related Protein of Toxoplasma gondii Is Important for Rhoptry Biogenesis and Virulence
N. M. Chasen, Beejan Asady, L. Lemgruber, R. Vommaro +3 more
2017Msphere27 citations Open access
Semantic Scholar
Integrative analysis associates monocytes with insufficient erythropoiesis during acute Plasmodium cynomolgi malaria in rhesus macaques
Yan Tang, C. Joyner, Mónica Cabrera-Mora, C. Saney +10 more
2017Malaria Journal23 citations Open access
Semantic Scholar
Is reliance on an inaccurate genome sequence sabotaging your experiments?
R. Baptista, J. Kissinger
2019PLoS Pathogens22 citations Open access
Semantic Scholar
Genome-wide upstream motif analysis of Cryptosporidium parvum genes clustered by expression profile
Jenna Oberstaller, S. Joseph, J. Kissinger
2013BMC Genomics22 citations Open access
Semantic Scholar
A Vision for Health Informatics: Introducing the SKED Framework.An Extensible Architecture for Scientific Knowledge Extraction from Data
Elizabeth D. Trippe, Jacob B Aguilar, Yi H. Yan, Mustafa V. Nural +8 more
201721 citations
Semantic Scholar
Genetic crosses within and between species of Cryptosporidium
S. Shaw, I. Cohn, R. Baptista, Guoqin Xia +4 more
2023Proceedings of the National Academy of Sciences of the United States of America18 citations Open access
Semantic Scholar
Cryptosporidium Genomics — Current Understanding, Advances, and Applications
Fiifi Agyabeng-Dadzie, Xiao Rui, J. Kissinger
2024Current Tropical Medicine Reports17 citations Open access
Semantic Scholar
Challenges for Cryptosporidium Population Studies
R. Baptista, Garrett W Cooper, J. Kissinger
2021Genes17 citations Open access
Semantic Scholar
Comparative transcriptomics and metabolomics in a rhesus macaque drug administration study
Kevin J. Lee, Wei-Wei Yin, D. Arafat, Yan Tang +14 more
2014Front. Cell Dev. Biol.17 citations Open access
Semantic Scholar
Malaria Diagnostics and Surveillance in the Post-Genomic Era
N. Lucchi, Jenna Oberstaller, J. Kissinger, V. Udhayakumar
2013Public Health Genomics17 citations Open access
Semantic Scholar
Accessing Cryptosporidium Omic and Isolate Data via CryptoDB.org.
Susanne Warrenfeltz, J. Kissinger
2019Methods in molecular biology16 citations Open access
Semantic Scholar
Malaria disrupts the rhesus macaque gut microbiome
Danielle N. Farinella, Sukhpreet Kaur, ViLinh Tran, Mónica Cabrera-Mora +10 more
2023Frontiers in Cellular and Infection Microbiology15 citations Open access
Semantic Scholar

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