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Vanathi Gopalakrishnan · SciRah

Researcher profile · Semantic Scholar

Vanathi Gopalakrishnan

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Vanathi Gopalakrishnan — researcher profile on SciRah

h-index: 20
Works: 79
Citations: 1,527

Most-cited papers

Proteomic profiling of cerebrospinal fluid identifies biomarkers for amyotrophic lateral sclerosis
Srikanth Ranganathan, E. Williams, Philip Ganchev, Vanathi Gopalakrishnan +6 more
2005Journal of Neurochemistry227 citations
Semantic Scholar
Discovery and Verification of Amyotrophic Lateral Sclerosis Biomarkers by Proteomics
Henrik Ryberg, Jiyan An, S. Darko, J. Lustgarten +5 more
2010Muscle and Nerve125 citations Open access
Semantic Scholar
Improving Classification Performance with Discretization on Biomedical Datasets
J. Lustgarten, Vanathi Gopalakrishnan, H. Grover, S. Visweswaran
2008American Medical Informatics Association Annual Symposium111 citations
Semantic Scholar
Measuring Stability of Feature Selection in Biomedical Datasets
J. Lustgarten, Vanathi Gopalakrishnan, S. Visweswaran
2009American Medical Informatics Association Annual Symposium87 citations
Semantic Scholar
A Metaproteomic Approach to Study Human-Microbial Ecosystems at the Mucosal Luminal Interface
Xiaoxiao Li, J. LeBlanc, Allison K. Truong, Ravi K. Vuthoori +13 more
2011PLoS ONE85 citations Open access
Semantic Scholar
A Multiplexed Serum Biomarker Immunoassay Panel Discriminates Clinical Lung Cancer Patients from High-Risk Individuals Found to be Cancer-Free by CT Screening
W. Bigbee, Vanathi Gopalakrishnan, J. Weissfeld, David O. Wilson +3 more
2012Journal of Thoracic Oncology84 citations Open access
Semantic Scholar
An Overview and Evaluation of Recent Machine Learning Imputation Methods Using Cardiac Imaging Data
Yu-Zhe Liu, Vanathi Gopalakrishnan
2017International Conference on Data Technologies and Applications81 citations Open access
Semantic Scholar
Application of an efficient Bayesian discretization method to biomedical data
J. Lustgarten, S. Visweswaran, Vanathi Gopalakrishnan, G. Cooper
2011BMC Bioinformatics55 citations Open access
Semantic Scholar
Protein Fold Recognition Using Segmentation Conditional Random Fields (SCRFs)
Yan Liu, J. Carbonell, P. Weigele, Vanathi Gopalakrishnan
2006J. Comput. Biol.48 citations Open access
Semantic Scholar
Segmentation Conditional Random Fields (SCRFs): A New Approach for Protein Fold Recognition
Yan Liu, J. Carbonell, P. Weigele, Vanathi Gopalakrishnan
2005Annual International Conference on Research in Computational Molecular Biology45 citations
Semantic Scholar
Evaluation of a four-protein serum biomarker panel – biglycan, annexin-A6, myeloperoxidase and protein S100-A9 (B-AMP©) – for detection of esophageal adenocarcinoma
A. Zaidi, Vanathi Gopalakrishnan, P. Kasi, Xue-Mei Zeng +11 more
2014Cancer43 citations Open access
Semantic Scholar
Bayesian rule learning for biomedical data mining
Vanathi Gopalakrishnan, J. Lustgarten, S. Visweswaran, G. Cooper
2010Bioinform.43 citations Open access
Semantic Scholar
A Computational Framework for the Detection of Subcortical Brain Dysmaturation in Neonatal MRI Using 3D Convolutional Neural Networks
R. Ceschin, Alexandria Zahner, William Reynolds, J. Gaesser +4 more
2018NeuroImage42 citations Open access
Semantic Scholar
Comparison of probabilistic combination methods for protein secondary structure prediction
Yan Liu, J. Carbonell, J. Klein-Seetharaman, Vanathi Gopalakrishnan
2004Bioinform.38 citations Open access
Semantic Scholar
Lung Cancer Serum Biomarker Discovery Using Label Free LC-MS/MS
Xue-Mei Zeng, B. Hood, Ting Zhao, T. Conrads +8 more
2011Journal of Thoracic Oncology35 citations Open access
Semantic Scholar
cMRI-BED: A novel informatics framework for cardiac MRI biomarker extraction and discovery applied to pediatric cardiomyopathy classification
Vanathi Gopalakrishnan, Prahlad G. Menon, Shobhit Madan
2015BioMedical Engineering OnLine34 citations Open access
Semantic Scholar
Automatic annotation of protein motif function with Gene Ontology terms
Xing-Hua Lu, ChengXiang Zhai, Vanathi Gopalakrishnan, B. Buchanan
2004BMC Bioinformatics31 citations Open access
Semantic Scholar
Transfer Learning of Classification Rules for Biomarker Discovery and Verification from Molecular Profiling Studies
Philip Ganchev, D. Malehorn, W. Bigbee, Vanathi Gopalakrishnan
2011Journal of Biomedical Informatics28 citations Open access
Semantic Scholar
Induction of Rules for Biological Macromolecular Crystallization
Daniel N. Hennessy, Vanathi Gopalakrishnan, B. Buchanan, J. Rosenberg +1 more
1994Intelligent Systems in Molecular Biology24 citations
Semantic Scholar
Creating a pipeline of talent for informatics: STEM initiative for high school students in computer science, biology, and biomedical informatics
Joyeeta Dutta-Moscato, Vanathi Gopalakrishnan, M. Lotze, M. Becich
2014Journal of Pathology Informatics23 citations Open access
Semantic Scholar
On Predicting lung cancer subtypes using ‘omic’ data from tumor and tumor-adjacent histologically-normal tissue
A. L. Pineda, Henry A. Ogoe, J. Balasubramanian, Claudia Rangel Escareño +3 more
2016BMC Cancer20 citations Open access
Semantic Scholar
Rule Learning for Disease-Specific Biomarker Discovery from Clinical Proteomic Mass Spectra
Vanathi Gopalakrishnan, Philip Ganchev, Srikanth Ranganathan, R. Bowser
2006BioDM18 citations
Semantic Scholar
Knowledge transfer via classification rules using functional mapping for integrative modeling of gene expression data
Henry A. Ogoe, S. Visweswaran, Xing-Hua Lu, Vanathi Gopalakrishnan
2015BMC Bioinformatics15 citations Open access
Semantic Scholar
Application of Bayesian Logistic Regression to Mining Biomedical Data
Viji R. Avali, G. Cooper, Vanathi Gopalakrishnan
2014American Medical Informatics Association Annual Symposium15 citations
Semantic Scholar
Context sensitive vocabulary and its application in protein secondary structure prediction
Yan Liu, J. Carbonell, J. Klein-Seetharaman, Vanathi Gopalakrishnan
2004Annual International ACM SIGIR Conference on Research and Development in Information Retrieval14 citations
Semantic Scholar
Conditional Graphical Models for Protein Structural Motif Recognition
Yan Liu, J. Carbonell, Vanathi Gopalakrishnan, P. Weigele
2009J. Comput. Biol.13 citations Open access
Semantic Scholar
sfDM: Open-Source Software for Temporal Analysis and Visualization of Brain Tumor Diffusion MR Using Serial Functional Diffusion Mapping
R. Ceschin, A. Panigrahy, Vanathi Gopalakrishnan
2015Cancer Informatics11 citations Open access
Semantic Scholar
Artificial Intelligence's Grand Challenges: Past, Present, and Future
G. Mani, F. Chen, Steve Cross, T. Kalil +3 more
2021The AI Magazine10 citations Open access
Semantic Scholar
Learning Parsimonious Classification Rules from Gene Expression Data Using Bayesian Networks with Local Structure
J. Lustgarten, J. Balasubramanian, S. Visweswaran, Vanathi Gopalakrishnan
2017International Conference on Data Technologies and Applications9 citations Open access
Semantic Scholar
Novel MRI-derived quantitative biomarker for cardiac function applied to classifying ischemic cardiomyopathy within a Bayesian rule learning framework
Prahlad G. Menon, L. Morris, Mara Staines, J. Lima +2 more
2014Medical Imaging9 citations Open access
Semantic Scholar
Machine-learning techniques for macromolecular crystallization data.
Vanathi Gopalakrishnan, Gary Livingston, Daniel N. Hennessy, B. Buchanan +1 more
2004Acta Crystallographica Section D: Biological Crystallography9 citations
Semantic Scholar
Challenges and opportunities for omics-based precision medicine in chronic low back pain
Ayesha Firdous, Vanathi Gopalakrishnan, N. Vo, G. Sowa
2022European spine journal8 citations
Semantic Scholar
A novel approach to modeling multifactorial diseases using Ensemble Bayesian Rule classifiers
J. Balasubramanian, Rebecca D Boes, Vanathi Gopalakrishnan
2020Journal of Biomedical Informatics8 citations Open access
Semantic Scholar
A bayesian rule generation framework for 'omic' biomedical data analysis
Vanathi Gopalakrishnan, J. Lustgarten
20098 citations
Semantic Scholar
Realistic biomarkers from plasma extracellular vesicles for detection of beryllium exposure
Raju S. R. Adduri, R. Vasireddy, M. Mroz, Anish Bhakta +8 more
2022International Archives of Occupational and Environmental Health7 citations Open access
Semantic Scholar
Application of Taxonomic Modeling to Microbiota Data Mining for Detection of Helminth Infection in Global Populations
M. E. Torbati, M. Mitreva, Vanathi Gopalakrishnan
2016International Conference on Data Technologies and Applications7 citations Open access
Semantic Scholar
Selective Model Averaging with Bayesian Rule Learning for Predictive Biomedicine
J. Balasubramanian, S. Visweswaran, G. Cooper, Vanathi Gopalakrishnan
2014AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science7 citations
Semantic Scholar
Knowledge-based variable selection for learning rules from proteomic data
J. Lustgarten, S. Visweswaran, R. Bowser, W. Hogan +1 more
2009BMC Bioinformatics7 citations Open access
Semantic Scholar
Semi-automated literature mining to identify putative biomarkers of disease from multiple biofluids
R. Jordan, S. Visweswaran, Vanathi Gopalakrishnan
2014Journal of Clinical Bioinformatics6 citations Open access
Semantic Scholar
A Partitioning Based Adaptive Method for Robust Removal of Irrelevant Features from High-dimensional Biomedical Datasets
Guo-Dong Liu, Lan Kong, Vanathi Gopalakrishnan
2012AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science4 citations
Semantic Scholar
Efficient Processing of Models for Large-scale Shotgun Proteomics Data
H. Grover, Vanathi Gopalakrishnan
2012International Conference on Collaborative Computing4 citations Open access
Semantic Scholar
Trends in Postpartum Hemorrhage Prevalence and Comorbidity Burden: Insights from the ENACT Network Aggregated Electronic Health Record Data
M. Samayamuthu, O. Kravchenko, W. Lo-Ciganic, E. Sadhu +3 more
2024Research Square3 citations Open access
Semantic Scholar
A novel framework to enhance scientific knowledge of cardiovascular MRI biomarkers and their application to pediatric cardiomyopathy classification
Vanathi Gopalakrishnan, Prahlad G. Menon, Shobhit Madan
2014International Work-Conference on Bioinformatics and Biomedical Engineering3 citations
Semantic Scholar
Context-Sensitive Markov Models for Peptide Scoring and Identification from Tandem Mass Spectrometry
H. Grover, G. Wallstrom, Christine C. Wu, Vanathi Gopalakrishnan
2013Omics3 citations Open access
Semantic Scholar
Protein Quaternary Fold Recognition Using Conditional Graphical Models
Yan Liu, J. Carbonell, Vanathi Gopalakrishnan, P. Weigele
2007International Joint Conference on Artificial Intelligence3 citations
Semantic Scholar
Tunable structure priors for Bayesian rule learning for knowledge integrated biomarker discovery
J. Balasubramanian, Vanathi Gopalakrishnan
2018World Journal of Clinical Oncology2 citations Open access
Semantic Scholar
Quantitative clinical guidelines for imaging use in evaluation of pediatric cardiomyopathy
Yu-Zhe Liu, Vanathi Gopalakrishnan, Shobhit Madan
2015IEEE International Conference on Bioinformatics and Biomedicine2 citations
Semantic Scholar
Abstract 4564: Lung cancer serum biomarker discovery using label free LC-MS/MS
Xue-Mei Zeng, B. Hood, Ting Zhao, T. Conrads +7 more
20102 citations
Semantic Scholar
Computer Aided Knowledge Discovery in Biomedicine
Vanathi Gopalakrishnan
20092 citations
Semantic Scholar
Parallel experiment planning: macromolecular crystallization case study
B. Buchanan, Vanathi Gopalakrishnan
19992 citations
Semantic Scholar

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