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I. Yamato · SciRah

Researcher profile · Semantic Scholar

I. Yamato

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I. Yamato — researcher profile on SciRah

h-index: 32
Works: 223
Citations: 3,308

Most-cited papers

Quantum Adaptivity in Biology: From Genetics to Cognition
M. Asano, A. Khrennikov, M. Ohya, Yoshiharu Tanaka +1 more
2015Springer Netherlands133 citations
Semantic Scholar
Rotation mechanism of Enterococcus hirae V1-ATPase based on asymmetric crystal structures
S. Arai, S. Saijo, Kano Suzuki, K. Mizutani +9 more
2013Nature125 citations
Semantic Scholar
Quantum probability in decision making from quantum information representation of neuronal states
A. Khrennikov, I. Basieva, E. Pothos, I. Yamato
2018Scientific Reports83 citations Open access
Semantic Scholar
Quantum Information Biology: From Information Interpretation of Quantum Mechanics to Applications in Molecular Biology and Cognitive Psychology
M. Asano, I. Basieva, A. Khrennikov, M. Ohya +2 more
2015Foundations of physics63 citations Open access
Semantic Scholar
Basic Properties of Rotary Dynamics of the Molecular Motor Enterococcus hirae V1-ATPase*
Yoshihiro Minagawa, H. Ueno, Mayu Hara, Y. Ishizuka-Katsura +9 more
2013Journal of Biological Chemistry54 citations Open access
Semantic Scholar
A model of epigenetic evolution based on theory of open quantum systems
M. Asano, I. Basieva, A. Khrennikov, M. Ohya +2 more
2013Journal of Systems and Synthetic Biology50 citations Open access
Semantic Scholar
Seroprevalence of Salmonella and Mycoplasma gallisepticum infection in chickens in Rajshahi and surrounding districts of Bangladesh
K. Hossain, M. Hossain, I. Yamato
201048 citations Open access
Semantic Scholar
Crystal structure of the central axis DF complex of the prokaryotic V-ATPase
S. Saijo, S. Arai, K. M. Mozaffor Hossain, I. Yamato +9 more
2011Proceedings of the National Academy of Sciences of the United States of America47 citations Open access
Semantic Scholar
Crystal structures of the ATP-binding and ADP-release dwells of the V1 rotary motor
Kano Suzuki, K. Mizutani, S. Maruyama, K. Shimono +8 more
2016Nature Communications44 citations Open access
Semantic Scholar
Structure of the rotor ring modified with N,N′-dicyclohexylcarbodiimide of the Na+-transporting vacuolar ATPase
K. Mizutani, M. Yamamoto, Kano Suzuki, I. Yamato +6 more
2011Proceedings of the National Academy of Sciences of the United States of America44 citations Open access
Semantic Scholar
Quantum-like interference effect in gene expression: glucose-lactose destructive interference
I. Basieva, A. Khrennikov, M. Ohya, I. Yamato
2011Journal of Systems and Synthetic Biology41 citations Open access
Semantic Scholar
Non-Kolmogorovian Approach to the Context-Dependent Systems Breaking the Classical Probability Law
M. Asano, I. Basieva, A. Khrennikov, M. Ohya +1 more
201338 citations
Semantic Scholar
Quantum-like model for the adaptive dynamics of the genetic regulation of E. coli’s metabolism of glucose/lactose
M. Asano, I. Basieva, A. Khrennikov, M. Ohya +2 more
2012Journal of Systems and Synthetic Biology38 citations Open access
Semantic Scholar
Torque Generation of Enterococcus hirae V-ATPase*
H. Ueno, Yoshihiro Minagawa, Mayu Hara, Suhaila Rahman +5 more
2014Journal of Biological Chemistry29 citations Open access
Semantic Scholar
Antibody levels against Newcastle Disease Virus in chickens in Rajshahi and surrounding districts of Bangladesh
K. Hossain, Md Yamin Ali, I. Yamato
201029 citations Open access
Semantic Scholar
Quantum-like model of diauxie in Escherichia coli: operational description of precultivation effect.
M. Asano, I. Basieva, A. Khrennikov, M. Ohya +2 more
2012Journal of Theoretical Biology28 citations
Semantic Scholar
Interaction and Stoichiometry of the Peripheral Stalk Subunits NtpE and NtpF and the N-terminal Hydrophilic Domain of NtpI of Enterococcus hirae V-ATPase*
M. Yamamoto, S. Unzai, S. Saijo, K. Ito +12 more
2008Journal of Biological Chemistry26 citations Open access
Semantic Scholar
A model of differentiation in quantum bioinformatics.
M. Asano, I. Basieva, A. Khrennikov, I. Yamato
2017Progress in Biophysics and Molecular Biology23 citations
Semantic Scholar
Reconstitution in vitro of the catalytic portion (NtpA3-B3-D-G complex) of Enterococcus hirae V-type Na+-ATPase.
S. Arai, I. Yamato, Asuka Shiokawa, S. Saijo +8 more
2009Biochemical and Biophysical Research Communications - BBRC21 citations
Semantic Scholar
Potent inhibition of dinuclear zinc(II) peptidase, an aminopeptidase from Aeromonas proteolytica, by 8-quinolinol derivatives: inhibitor design based on Zn2+ fluorophores, kinetic, and X-ray crystallographic study
Kengo Hanaya, M. Suetsugu, S. Saijo, I. Yamato +1 more
2012JBIC Journal of Biological Inorganic Chemistry18 citations
Semantic Scholar
Metastable asymmetrical structure of a shaftless V1 motor
S. Maruyama, Kano Suzuki, Motonori Imamura, Hikaru Sasaki +11 more
2019Science Advances15 citations Open access
Semantic Scholar
Biochemical and Biophysical Properties of Interactions between Subunits of the Peripheral Stalk Region of Human V-ATPase
Suhaila Rahman, I. Yamato, S. Saijo, K. Mizutani +7 more
2013PLoS ONE14 citations Open access
Semantic Scholar
Rotation Mechanism of Molecular Motor V1-ATPase Studied by Multiscale Molecular Dynamics Simulation
Yuta Isaka, Toru Ekimoto, Yuichi Kokabu, I. Yamato +2 more
2017Biophysical Journal12 citations Open access
Semantic Scholar
Three-body system metaphor for the two-slit experiment and Escherichia coli lactose–glucose metabolism
M. Asano, A. Khrennikov, M. Ohya, Yoshiharu Tanaka +1 more
2016Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences12 citations Open access
Semantic Scholar
Operating principles of rotary molecular motors: differences between F1 and V1 motors
I. Yamato, Y. Kakinuma, T. Murata
2016Biophysics and Physicobiology12 citations Open access
Semantic Scholar
Energy and information flows in biological systems: Bioenergy transduction of V1-ATPase rotary motor and dynamics of thermodynamic entropy in information flows.
I. Yamato, T. Murata, A. Khrennikov
2017Progress in Biophysics and Molecular Biology10 citations
Semantic Scholar
A general quantum information model for the contextual dependent systems breaking the classical probability law
M. Asano, I. Basieva, A. Khrennikov, M. Ohya +1 more
201110 citations
Semantic Scholar
Towards modeling of epigenetic evolution with the aid of theory of open quantum systems
M. Asano, I. Basieva, A. Khrennikov, M. Ohya +2 more
20129 citations
Semantic Scholar
Sarkosyl is a good regeneration reagent for studies on vacuolar-type ATPase subunit interactions in Biacore experiments.
Suhaila Rahman, S. Arai, S. Saijo, I. Yamato +1 more
2011Analytical Biochemistry9 citations
Semantic Scholar
Expression, purification and characterization of isoforms of peripheral stalk subunits of human V-ATPase.
Suhaila Rahman, Y. Ishizuka-Katsura, S. Arai, S. Saijo +10 more
2011Protein Expression and Purification9 citations
Semantic Scholar
Rotational Mechanism Model of the Bacterial V1 Motor Based on Structural and Computational Analyses
A. Singharoy, C. Chipot, Toru Ekimoto, Kano Suzuki +3 more
2019Frontiers in Physiology7 citations Open access
Semantic Scholar
Loose Binding of the DF Axis with the A3B3 Complex Stimulates the Initial Activity of Enterococcus hirae V1-ATPase
Md. jahangir Alam, S. Arai, S. Saijo, Kano Suzuki +10 more
2013PLoS ONE7 citations Open access
Semantic Scholar
Fundamentals of Molecular Biology
M. Asano, A. Khrennikov, M. Ohya, Yoshiharu Tanaka +1 more
20156 citations
Semantic Scholar
Mutagenesis of the Residues Forming an Ion Binding Pocket of the NtpK Subunit of Enterococcus hirae V-ATPase
Miyuki Kawano-Kawada, T. Iwaki, T. Hosaka, T. Murata +3 more
2012Journal of Bacteriology6 citations Open access
Semantic Scholar
Application of Non-Kolmogorovian Probability and Quantum Adaptive Dynamics to Unconscious Inference in Visual Perception Process
L. Accardi, A. Khrennikov, M. Ohya, Yoshiharu Tanaka +1 more
2016Open systems & information dynamics4 citations
Semantic Scholar
Binding interactions of the peripheral stalk subunit isoforms from human V-ATPase
Suhaila Rahman, I. Yamato, S. Saijo, K. Mizutani +7 more
2016Bioscience, biotechnology and biochemistry4 citations
Semantic Scholar
Quantum-like model of glucose effect on Escherichia coli growth
M. Asano, I. Basieva, A. Khrennikov, M. Ohya +2 more
20124 citations
Semantic Scholar
Calculating the Na⁺ translocating V-ATPase catalytic site affinity for substrate binding by homology modeled NtpA monomer using molecular dynamics/free energy calculation.
Zahed Muhammed, S. Arai, S. Saijo, I. Yamato +2 more
2012Journal of Molecular Graphics and Modelling4 citations
Semantic Scholar
An affinity change model to elucidate the rotation mechanism of V1-ATPase.
S. Arai, S. Maruyama, M. Shiroishi, I. Yamato +1 more
2020Biochemical and Biophysical Research Communications - BBRC3 citations Open access
Semantic Scholar
A Quantum-Like Model of Escherichia coli's Metabolism Based on Adaptive Dynamics
M. Asano, I. Basieva, A. Khrennikov, M. Ohya +2 more
2012Quantum Interaction3 citations
Semantic Scholar
Adaptive Dynamics and Its Application to Context Dependent Systems Breaking the Classical Probability Law
M. Asano, I. Basieva, A. Khrennikov, M. Ohya +2 more
2012Quantum Interaction3 citations
Semantic Scholar
Significance of the Glutamate-139 Residue of the V-Type Na+-ATPase NtpK Subunit in Catalytic Turnover Linked with Salt Tolerance of Enterococcus hirae
Miyuki Kawano-Kawada, Hiroko Takahashi, K. Igarashi, T. Murata +3 more
2011Journal of Bacteriology3 citations Open access
Semantic Scholar
Role of Asp187 and Gln190 in the Na+/proline symporter (PutP) of Escherichia coli.
Anowarul Amin, T. Ando, S. Saijo, I. Yamato
2011Journal of Biochemistry (Tokyo)3 citations
Semantic Scholar
Estimation of Ligand Binding Free Energies of F-ATPase by Using Molecular Dynamics/Free Energy Calculation
A. Suenaga, O. Umezu, T. Ando, I. Yamato +2 more
20083 citations Open access
Semantic Scholar
Function and Regulation of Mammalian V-ATPase Isoforms
Suhaila Rahman, I. Yamato, T. Murata
20162 citations
Semantic Scholar
Quantum-Like Paradigm: From Molecular Biology to Cognitive Psychology
M. Asano, M. Ohya, Yoshiharu Tanaka, I. Yamato +2 more
2011Quantum Interaction2 citations
Semantic Scholar
BASICS OF MOLECULAR SIMULATION AND ITS APPLICATION TO BIOMOLECULES
T. Ando, I. Yamato
20092 citations
Semantic Scholar
Toward in Silico Biology (from Sequences to Systems)
I. Yamato, T. Ando, A. Suzuki, K. Harada +4 more
20082 citations
Semantic Scholar
ROTATION MECHANISM REVEALED FROM THE THREE DIMENSIONAL STRUCTURE AND SINGLE MOLECULE OBSERVATION OF V1-ATPASE FROM E. HIRAE
I. Yamato, T. Murata
20201 citations
Semantic Scholar
Energy flow in biological system: Bioenergy transduction of V1-ATPase molecular rotary motor from E. hirae
I. Yamato, T. Murata, A. Khrennikov
20171 citations
Semantic Scholar

Frequent co-authors

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T. Murata×26
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T. Murata — researcher profile on SciRah
A. Khrennikov×18
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M. Ohya×16
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M. Asano×15
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I. Basieva — researcher profile on SciRah

Yoshiharu Tanaka×13

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Yoshiharu Tanaka — researcher profile on SciRah

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S. Saijo — researcher profile on SciRah

M. Shirouzu×12

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S. Yokoyama×11

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Y. Kakinuma×10

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Y. Kakinuma — researcher profile on SciRah

Y. Ishizuka-Katsura×10

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T. Terada — researcher profile on SciRah