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O. Sezerman · SciRah

Researcher profile · Semantic Scholar

O. Sezerman

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O. Sezerman — researcher profile on SciRah

h-index: 24
Works: 145
Citations: 2,518

Most-cited papers

pathfindR: An R Package for Comprehensive Identification of Enriched Pathways in Omics Data Through Active Subnetworks
E. Ulgen, Ozan Ozisik, O. Sezerman
2019Frontiers in Genetics404 citations Open access
Semantic Scholar
A global metagenomic map of urban microbiomes and antimicrobial resistance
D. Danko, D. Bezdan, Evan E. Afshin, Sofia Ahsanuddin +95 more
2021Cell307 citations Open access
Semantic Scholar
Enhancing Reuse of Data and Biological Material in Medical Research: From FAIR to FAIR-Health
Petr Holub, Florian Kohlmayer, Fabian Prasser, M. Mayrhofer +17 more
2018Biopreservation and Biobanking98 citations Open access
Semantic Scholar
Molecular diversity of LysM carbohydrate-binding motifs in fungi
G. Akcapinar, Lisa Kappel, O. Sezerman, V. Seidl‐Seiboth
2015Current Genetics88 citations Open access
Semantic Scholar
Sensory neurons drive pancreatic cancer progression through glutamatergic neuron-cancer pseudo-synapses.
Lei Ren, Chun-Feng Liu, K. Çifcibaşı, Markus Ballmann +34 more
2025Cancer Cell71 citations Open access
Semantic Scholar
RACK1 Is an Interaction Partner of ATG5 and a Novel Regulator of Autophagy*
Seçil Erbil, O. Oral, Géraldine Mitou, Cenk Kığ +7 more
2016Journal of Biological Chemistry49 citations Open access
Semantic Scholar
Biomarkers, Omics and Artificial Intelligence for Early Detection of Pancreatic Cancer.
Kate Murray, L. Oldfield, Irena Stefanova, M. Gentiluomo +25 more
2025Seminars in Cancer Biology39 citations Open access
Semantic Scholar
Global Genetic Cartography of Urban Metagenomes and Anti-Microbial Resistance
D. Danko, D. Bezdan, Ebrahim Afshinnekoo, Sofia Ahsanuddin +93 more
2019bioRxiv33 citations Open access
Semantic Scholar
Computational approaches for de novo design and redesign of metal-binding sites on proteins
G. Akcapinar, O. Sezerman
2017Bioscience Reports33 citations Open access
Semantic Scholar
IDH-mutant glioma specific association of rs55705857 located at 8q24.21 involves MYC deregulation
Y. Oktay, Ege Ülgen, Özge Can, C. Akyerli +21 more
2016Scientific Reports32 citations Open access
Semantic Scholar
SARS-CoV-2 isolation and propagation from Turkish COVID-19 patients
Cihan Taştan, Bulut Yurtsever, Gözde Sir KarakuŞ, Derya Dİlek KanÇaĞi +13 more
2020bioRxiv30 citations Open access
Semantic Scholar
Adaptive phenotypic modulations lead to therapy resistance in chronic myeloid leukemia cells
Seda Baykal-Köse, E. Acikgoz, A. Yavuz, Öykü Gönül Geyik +4 more
2020PLoS ONE30 citations Open access
Semantic Scholar
Medication‐resistant epilepsy is associated with a unique gut microbiota signature
A. Riva, Eray Şahin, G. Volpedo, Noemi Teresa Catania +11 more
2025Epilepsia24 citations Open access
Semantic Scholar
Understanding thermal and organic solvent stability of thermoalkalophilic lipases: insights from computational predictions and experiments
M. Shehata, Emel Timuçin, A. Venturini, O. Sezerman
2019Journal of Molecular Modeling24 citations Open access
Semantic Scholar
Phenotype screens of murine pancreatic cancer identify a Tgf-α-Ccl2-paxillin axis driving human-like neural invasion
Xiao-Bo Wang, R. Istvanffy, Linhan Ye, S. Teller +31 more
2023Journal of Clinical Investigation23 citations Open access
Semantic Scholar
pathfindR: An R Package for Pathway Enrichment Analysis Utilizing Active Subnetworks
E. Ulgen, Ozan Ozisik, O. Sezerman
2018bioRxiv23 citations Open access
Semantic Scholar
Prediction of HIV Drug Resistance by Combining Sequence and Structural Properties
Z. Khalid, O. Sezerman
2018IEEE/ACM Transactions on Computational Biology & Bioinformatics19 citations
Semantic Scholar
Deciphering drought-response in wheat (Triticum aestivum): physiological, biochemical, and transcriptomic insights into tolerant and sensitive cultivars under dehydration shock
B. Cevher-Keskin, Yasemin Yıldızhan, A. Sekmen, Rumeysa Fayetorbay +5 more
2025Frontiers in Plant Science16 citations Open access
Semantic Scholar
Zinc Modulates Self-Assembly of Bacillus thermocatenulatus Lipase.
Emel Timuçin, O. Sezerman
2015Biochemistry16 citations
Semantic Scholar
Whole exome sequencing-based analysis to identify DNA damage repair deficiency as a major contributor to gliomagenesis in adult diffuse gliomas.
Ege Ülgen, Özge Can, K. Bilguvar, Y. Oktay +6 more
2020Journal of Neurosurgery15 citations
Semantic Scholar
Investigating the structural properties of the active conformation BTL2 of a lipase from Geobacillus thermocatenulatus in toluene using molecular dynamic simulations and engineering BTL2 via in-silico mutation
Aslı Yenenler, A. Venturini, Hüseyin Cahit Burduroğlu, O. Sezerman
2018Journal of Molecular Modeling14 citations Open access
Semantic Scholar
Is cutaneous microbiota a player in disease pathogenesis? Comparison of cutaneous microbiota in psoriasis and seborrheic dermatitis with scalp involvement.
M. Kayıran, Eray Şahin, E. Kocoglu, O. Sezerman +2 more
2022Indian Journal of Dermatology, Venereology and Leprology13 citations Open access
Semantic Scholar
Intraoperative Neuromonitoring of Blink Reflex During Posterior Fossa Surgeries and Its Correlation With Clinical Outcome
E. Aydınlar, Müge Koçak, H. Soykam, B. Mat +4 more
2020Journal of clinical neurophysiology13 citations
Semantic Scholar
Corneal bacterial microbiome in patients with keratoconus using next-generation sequencing-based 16S rRNA gene analysis.
Uğur Tunç, Cenk Çelebi Ar, Berkay Yekta Ekren, Y. Yıldırım +3 more
2023Experimental Eye Research12 citations
Semantic Scholar
A splice site mutation in the TSEN2 causes a new syndrome with craniofacial and central nervous system malformations, and atypical hemolytic uremic syndrome
N. Canpolat, Ding-Xiao Liu, E. Atayar, S. Saygılı +16 more
2021Clinical Genetics12 citations Open access
Semantic Scholar
High-throughput profiling reveals perturbation of endoplasmic reticulum stress-related genes in atherosclerosis induced by high-cholesterol diet and the protective role of vitamin E.
Perinur Bozaykut, R. Ekren, O. Sezerman, V. Gladyshev +1 more
2020Biofactors10 citations
Semantic Scholar
Computational drug repurposing to predict approved and novel drug-disease associations.
Z. Khalid, O. Sezerman
2018Journal of Molecular Graphics and Modelling10 citations
Semantic Scholar
Brave new surfactant world revisited by thermoalkalophilic lipases: computational insights into the role of SDS as a substrate analog.
M. Shehata, Aişe Ünlü, Javier Iglesias-Fernández, Sílvia Osuna +2 more
2023Physical Chemistry, Chemical Physics - PCCP9 citations Open access
Semantic Scholar
Integrated bioinformatics analysis of validated and circulating miRNAs in ovarian cancer
B. Doğan, Ece Gumusoglu, E. Ulgen, O. Sezerman +1 more
2022Genomics & Informatics9 citations Open access
Semantic Scholar
Thermostability of the PYL-PP2C Heterodimer Is Dependent on Magnesium: In Silico Insights into the Link between Heat Stress Response and Magnesium Deficiency in Plants
Emel Timuçin, O. Sezerman
2018Journal of Chemical Information and Modeling9 citations
Semantic Scholar
Ligand binding pocket of a novel Allatostatin receptor type C of stick insect, Carausius morosus
Burcin Duan Sahbaz, O. Sezerman, H. Torun, Necla Birgul-Iyison
2017Scientific Reports9 citations Open access
Semantic Scholar
Design and characterizations of two novel cellulases through single-gene shuffling of Cel12A (EG3) gene from Trichoderma reseei.
Aslı Yenenler, O. Sezerman
2016Protein engineering, design & selection : PEDS9 citations Open access
Semantic Scholar
Effect of the switch status of Helicobacter pylori outer inflammatory protein A on gastric diseases
Sinem Oktem-Okullu, Tayyip Karaman, Sümeyye Akçelik-Deveci, Emel Timuçin +4 more
2023AMB Express8 citations Open access
Semantic Scholar
A comprehensive study on identifying the structural and functional SNPs of human neuronal membrane glycoprotein M6A (GPM6A)
Z. Khalid, O. Sezerman
2020Journal of Biomolecular Structure and Dynamics8 citations Open access
Semantic Scholar
First Report and In Silico Analysis of Leishmania virus (LRV2) identified in an autochthonous Leishmania major isolate in Turkey.
Özgür Kurt, Nesteren Mansur, Ibrahim Cavus, Orhan Özcan +4 more
2019The New Microbiologica8 citations
Semantic Scholar
A comparison of various feature extraction and machine learning methods for antimicrobial resistance prediction in streptococcus pneumoniae
D. E. Kaya, Ege Ülgen, A. Kocagoz, O. Sezerman
2023Frontiers in Antibiotics7 citations Open access
Semantic Scholar
Probing the Structural Dynamics of the Catalytic Domain of Human Soluble Guanylate Cyclase
R. Khalid, Arooma Maryam, O. Sezerman, E. Mylonas +2 more
2020Scientific Reports7 citations Open access
Semantic Scholar
driveR: a novel method for prioritizing cancer driver genes using somatic genomics data
Ege Ülgen, O. Sezerman
2020BMC Bioinformatics7 citations Open access
Semantic Scholar
Active Subnetwork GA: A Two Stage Genetic Algorithm Approach to Active Subnetwork Search
Ozan Özişik, Burcu Bakir-Gungor, B. Diri, O. Sezerman
20177 citations
Semantic Scholar
Privacy-Preserving Machine Learning (PPML) Inference for Clinically Actionable Models
Baris Balaban, S. S. Magara, C. Yilgor, A. Yucekul +10 more
2025IEEE Access6 citations Open access
Semantic Scholar
The Metabolic Profile of Plasma During Epileptogenesis in a Rat Model of Lithium–Pilocarpine-Induced Temporal Lobe Epilepsy
Fatma Merve Antmen, E. Matpan, Ekin Dongel Dayanc, Eylem Ozge Savas +12 more
2025Molecular Neurobiology6 citations Open access
Semantic Scholar
Pathway-Specific Insights into Colorectal Cancer Through Comprehensive Multi-Omics Data Integration
Tayyip Karaman, Sinem Oktem Okullu, Gunseli Bayram Akcapinar, O. Sezerman
2025Biology6 citations Open access
Semantic Scholar
3’UTR RNA editing driven by ADAR1 modulates MDM2 expression in breast cancer cells
Elanur Almeric, Deniz Karagozoglu, Mustafa Cicek, Didem Naz Dioken +7 more
2025Functional & Integrative Genomics6 citations Open access
Semantic Scholar
Identification of epilepsy related pathways using genome-wide DNA methylation measures: A trio-based approach
O. Ozdemir, Ece Egemen, S. U. Ugur Iseri, O. Sezerman +3 more
2019PLoS ONE6 citations Open access
Semantic Scholar
ZK DrugResist 2.0: A TextMiner to extract semantic relations of drug resistance from PubMed
Z. Khalid, O. Sezerman
2017Journal of Biomedical Informatics6 citations Open access
Semantic Scholar
Exome sequencing reveals low-frequency and rare variant contributions to multiple sclerosis susceptibility in Turkish families
Furkan Büyükgöl, Berk Gürdamar, M. Aluçlu, Y. Beckmann +39 more
2025Scientific Reports5 citations Open access
Semantic Scholar
Transfer learning with multiomics integration and deep neural networks reveals drug resistance mechanisms in cancer
S. Alpsoy, O. Sezerman
2025Scientific Reports5 citations Open access
Semantic Scholar
Mutations and Copy Number Alterations in IDH Wild-Type Glioblastomas Are Shaped by Different Oncogenic Mechanisms
Ege Ülgen, S. Karacan, U. Gerlevik, Özge Can +10 more
2020Biomedicines5 citations Open access
Semantic Scholar
Predicting mechanical complications in adult spinal deformity patients with postoperative proportioned and moderately disproportioned alignment
Baris Balaban, Nuri Demirci, C. Yilgor, A. Yucekul +12 more
2025Acta Orthopaedica et Traumatologica Turcica4 citations Open access
Semantic Scholar
Longitudinal non-targeted metabolomic profiling of urine samples for monitoring of kidney transplantation patients
Ihsan Yozgat, U. Cakır, M. Serdar, Sevgi Şahin +4 more
2024Renal Failure4 citations Open access
Semantic Scholar

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