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Xiao-Qiu Huang · SciRah

Researcher profile · Semantic Scholar

Xiao-Qiu Huang

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Xiao-Qiu Huang — researcher profile on SciRah

h-index: 27
Works: 81
Citations: 15K

Most-cited papers

CAP3: A DNA sequence assembly program.
Xiao-Qiu Huang, A. Madan
1999Genome Research5,343 citations Open access
Semantic Scholar
Initial sequence of the chimpanzee genome and comparison with the human genome
T. Mikkelsen, L. Hillier, E. Eichler, M. Zody +63 more
2005Nature2,350 citations Open access
Semantic Scholar
TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets
G. Pertea, Xiao-Qiu Huang, F. Liang, Valentin Antonescu +8 more
2003Bioinform.1,813 citations Open access
Semantic Scholar
Evolutionary and Biomedical Insights from the Rhesus Macaque Genome
Richard A. Gibbs, Jeffrey Rogers, M. Katze, Roger E Bumgarner +172 more
2007Science1,392 citations Open access
Semantic Scholar
A time-efficient, linear-space local similarity algorithm
Xiao-Qiu Huang, W. Miller
19911,040 citations Open access
Semantic Scholar
Assemblathon 1: a competitive assessment of de novo short read assembly methods.
D. Earl, K. Bradnam, J. S. St John, A. Darling +67 more
2011Genome Research548 citations Open access
Semantic Scholar
Context sequences of translation initiation codon in plants
C. P. Joshi, Hao Zhou, Xiao-Qiu Huang, Vincent L. Chiang
1997Plant Molecular Biology355 citations
Semantic Scholar
Over 20% of human transcripts might form sense-antisense pairs.
Jianjun Chen, Miao Sun, W. Kent, Xiao-Qiu Huang +5 more
2004Nucleic Acids Research328 citations Open access
Semantic Scholar
PCAP: a whole-genome assembly program.
Xiao-Qiu Huang, Jianmin Wang, S. Aluru, Shiaw-Pyng Yang +1 more
2003Genome Research325 citations Open access
Semantic Scholar
A tool for analyzing and annotating genomic sequences.
Xiao-Qiu Huang, M. Adams, Hao Zhou, A. Kerlavage
1997Genomics248 citations
Semantic Scholar
A space-efficient algorithm for local similarities
Xiao-Qiu Huang, R. Hardison, W. Miller
1990Comput. Appl. Biosci.193 citations
Semantic Scholar
Evolution of alternative splicing after gene duplication.
Zhi-Xi Su, Jianmin Wang, Jun Yu, Xiao-Qiu Huang +1 more
2005Genome Research168 citations Open access
Semantic Scholar
Generation and annotation of the DNA sequences of human chromosomes 2 and 4
L. Hillier, Tina Graves, R. Fulton, L. Fulton +118 more
2005Nature120 citations Open access
Semantic Scholar
A generalized global alignment algorithm
Xiao-Qiu Huang, Kun-Mao Chao
2003Bioinform.94 citations Open access
Semantic Scholar
Box office prediction based on microblog
Jing-Fei Du, Hua Xu, Xiao-Qiu Huang
2014Expert systems with applications89 citations
Semantic Scholar
The Genome Sequence of the Fungal Pathogen Fusarium virguliforme That Causes Sudden Death Syndrome in Soybean
S. Srivastava, Xiao-Qiu Huang, Hargeet K. Brar, A. Fakhoury +2 more
2014PLoS ONE49 citations Open access
Semantic Scholar
Sequence and comparative analysis of the rabbit alpha-like globin gene cluster reveals a rapid mode of evolution in a G + C-rich region of mammalian genomes.
R. Hardison, D. Krane, D. Vandenbergh, Jan-Feng Cheng +5 more
1991Journal of Molecular Biology44 citations Open access
Semantic Scholar
Pairwise Statistical Significance of Local Sequence Alignment Using Sequence-Specific and Position-Specific Substitution Matrices
Ankit Agrawal, Xiao-Qiu Huang
2011IEEE/ACM Transactions on Computational Biology & Bioinformatics42 citations
Semantic Scholar
A space-efficient parallel sequence comparison algorithm for a message-passing multiprocessor
Xiao-Qiu Huang
1990International journal of parallel programming39 citations
Semantic Scholar
Generating a Genome Assembly with PCAP
Xiao-Qiu Huang, Shiaw-Pyng Yang
2005Current Protocols in Bioinformatics38 citations
Semantic Scholar
A Genome-Wide Survey of Highly Expressed Non-Coding RNAs and Biological Validation of Selected Candidates in Agrobacterium tumefaciens
Keunsub Lee, Xiao-Qiu Huang, Chichun Yang, Da-Sheng Lee +4 more
2013PLoS ONE36 citations Open access
Semantic Scholar
Application of a superword array in genome assembly
Xiao-Qiu Huang, Shiaw-Pyng Yang, A. Chinwalla, L. Hillier +3 more
2006Nucleic Acids Research36 citations Open access
Semantic Scholar
Parallelization of a local similarity algorithm
Xiao-Qiu Huang, W. Miller, S. Schwartz, R. Hardison
1992Comput. Appl. Biosci.36 citations
Semantic Scholar
Physical map-assisted whole-genome shotgun sequence assemblies.
R. Warren, Dmitry Varabei, D. Platt, Xiao-Qiu Huang +13 more
2006Genome Research29 citations Open access
Semantic Scholar
MAP2: multiple alignment of syntenic genomic sequences
Liang Ye, Xiao-Qiu Huang
2005Nucleic Acids Research29 citations Open access
Semantic Scholar
Pairwise statistical significance of local sequence alignment using multiple parameter sets and empirical justification of parameter set change penalty
Ankit Agrawal, Xiao-Qiu Huang
2008Data and Text Mining in Bioinformatics28 citations Open access
Semantic Scholar
Dynamic use of multiple parameter sets in sequence alignment
Xiao-Qiu Huang, D. Brutlag
2006Nucleic Acids Research28 citations Open access
Semantic Scholar
Pairwise Statistical Significance Versus Database Statistical Significance for Local Alignment of Protein Sequences
Ankit Agrawal, V. Brendel, Xiao-Qiu Huang
2008International Symposium on Bioinformatics Research and Applications24 citations
Semantic Scholar
Genetic architecture and evolution of the mating type locus in fusaria that cause soybean sudden death syndrome and bean root rot
T. J. Hughes, K. O'Donnell, S. Sink, A. Rooney +4 more
2014Mycologia23 citations Open access
Semantic Scholar
Pairwise statistical significance and empirical determination of effective gap opening penalties for protein local sequence alignment
Ankit Agrawal, V. Brendel, Xiao-Qiu Huang
2008Int. J. Comput. Biol. Drug Des.22 citations
Semantic Scholar
PSIBLAST_PairwiseStatSig: reordering PSI-BLAST hits using pairwise statistical significance
Ankit Agrawal, Xiao-Qiu Huang
2009Bioinform.20 citations Open access
Semantic Scholar
Tightly linked Rps12 and Rps13 genes provide broad-spectrum Phytophthora resistance in soybean
Dipak Kumar Sahoo, A. Das, Xiao-Qiu Huang, S. Cianzio +1 more
2021Scientific Reports19 citations Open access
Semantic Scholar
An O (N2 log N) restriction map comparison and search algorithm.
E. Myers, Xiao-Qiu Huang
1992Bulletin of Mathematical Biology19 citations
Semantic Scholar
A method for finding single-nucleotide polymorphisms with allele frequencies in sequences of deep coverage
Jianmin Wang, Xiao-Qiu Huang
2005BMC Bioinformatics17 citations Open access
Semantic Scholar
Identification of Highly Variable Supernumerary Chromosome Segments in an Asexual Pathogen
Xiao-Qiu Huang, A. Das, B. B. Sahu, S. Srivastava +3 more
2016PLoS ONE15 citations Open access
Semantic Scholar
Efficient combination of multiple word models for improved sequence comparison
Xiao-Qiu Huang, Liang Ye, Hui-Hsien Chou, I-Hsuan Yang +1 more
2004Bioinform.15 citations Open access
Semantic Scholar
Alignment of three sequences in quadratic space
Xiao-Qiu Huang
1993SIAP15 citations
Semantic Scholar
Protein expression analysis revealed a fine-tuned mechanism of in situ detoxification pathway for the tolerant industrial yeast Saccharomyces cerevisiae
Z. L. Liu, Xiao-Qiu Huang, Qian-Xiong Zhou, Jian Xu
2019Applied Microbiology and Biotechnology14 citations
Semantic Scholar
Implicit Feature Detection via a Constrained Topic Model and SVM
Wei Wang, Hua Xu, Xiao-Qiu Huang
2013Conference on Empirical Methods in Natural Language Processing14 citations Open access
Semantic Scholar
Pairwise Statistical Significance of Local Sequence Alignment Using Substitution Matrices with Sequence-Pair-Specific Distance
Ankit Agrawal, Xiao-Qiu Huang
2008International Conference on Information Technology14 citations Open access
Semantic Scholar
Parallel Syntenic Alignments
Natsuhiko Futamura, S. Aluru, Xiao-Qiu Huang
2002International Conference on High Performance Computing13 citations Open access
Semantic Scholar
Genome wide association study identifies novel single nucleotide polymorphic loci and candidate genes involved in soybean sudden death syndrome resistance
S. Swaminathan, A. Das, Teshale Assefa, J. Knight +7 more
2019PLoS ONE11 citations Open access
Semantic Scholar
Horizontal transfer generates genetic variation in an asexual pathogen
Xiao-Qiu Huang
2014PeerJ11 citations Open access
Semantic Scholar
Parametric Recomuting in Alignment Graphs
Xiao-Qiu Huang, P. Pevzner, W. Miller
1994Annual Symposium on Combinatorial Pattern Matching11 citations
Semantic Scholar
A Context Dependent Method for Comparing Sequences
Xiao-Qiu Huang
1994Annual Symposium on Combinatorial Pattern Matching11 citations
Semantic Scholar
Copy number variants impact phenotype-genotype relationships for adaptation of industrial yeast Saccharomyces cerevisiae
Z. L. Liu, Xiao-Qiu Huang
2022Applied Microbiology and Biotechnology10 citations
Semantic Scholar
Constrained-hLDA for Topic Discovery in Chinese Microblogs
Wei Wang, Hua Xu, Weiwei Yang, Xiao-Qiu Huang
2014Pacific-Asia Conference on Knowledge Discovery and Data Mining10 citations
Semantic Scholar
Conservative, Non-conservative and Average Pairwise Statistical Significance of Local Sequence Alignment
Ankit Agrawal, Xiao-Qiu Huang
2008IEEE International Conference on Bioinformatics and Biomedicine10 citations
Semantic Scholar
Pairwise DNA Alignment with Sequence Specific Transition-Transversion Ratio Using Multiple Parameter Sets
Ankit Agrawal, Xiao-Qiu Huang
2008International Conference on Information Technology10 citations
Semantic Scholar
A Lower Bound for the Edit-Distance Problem Under an Arbitrary Cost Function
Xiao-Qiu Huang
1988Information Processing Letters10 citations
Semantic Scholar

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