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Jean-Stéphane Varré · SciRah

Researcher profile · Semantic Scholar

Jean-Stéphane Varré

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Jean-Stéphane Varré — researcher profile on SciRah

h-index: 14
Works: 33
Citations: 844

Most-cited papers

Efficient and accurate P-value computation for Position Weight Matrices
H. Touzet, Jean-Stéphane Varré
2007Algorithms for Molecular Biology137 citations Open access
Semantic Scholar
Evolution of Plant-Like Crystalline Storage Polysaccharide in the Protozoan Parasite Toxoplasma gondii Argues for a Red Alga Ancestry
A. Coppin, Jean-Stéphane Varré, Luc Liénard, D. Dauvillée +5 more
2005Journal of Molecular Evolution124 citations
Semantic Scholar
yacrd and fpa: upstream tools for long-read genome assembly
P. Marijon, R. Chikhi, Jean-Stéphane Varré
2019bioRxiv77 citations Open access
Semantic Scholar
Transformation distances: a family of dissimilarity measures based on movements of segments
Jean-Stéphane Varré, J. Delahaye, Eric Rivals
1999Bioinform.72 citations Open access
Semantic Scholar
Complete Sequence, Multichromosomal Architecture and Transcriptome Analysis of the Solanum tuberosum Mitochondrial Genome
Jean-Stéphane Varré, N. D'Agostino, P. Touzet, S. Gallina +7 more
2019International Journal of Molecular Sciences62 citations Open access
Semantic Scholar
A scenario of mitochondrial genome evolution in maize based on rearrangement events
Aude Darracq, Jean-Stéphane Varré, P. Touzet
2010BMC Genomics52 citations Open access
Semantic Scholar
Sorting by Reversals with Common Intervals
M. Figeac, Jean-Stéphane Varré
2004Workshop on Algorithms in Bioinformatics43 citations
Semantic Scholar
A complete protocol for whole-genome sequencing of virus from clinical samples: Application to coronavirus OC43
F. Maurier, D. Beury, Léa Fléchon, Jean-Stéphane Varré +4 more
2019Virology35 citations Open access
Semantic Scholar
TFM-Explorer: mining cis-regulatory regions in genomes
L. Tonon, H. Touzet, Jean-Stéphane Varré
2010Nucleic Acids Res.33 citations Open access
Semantic Scholar
Large Scale Matching for Position Weight Matrices
A. Liefooghe, H. Touzet, Jean-Stéphane Varré
2006Annual Symposium on Combinatorial Pattern Matching31 citations
Semantic Scholar
The transformation distance: A dissimilarity measure based an movements of segments
Jean-Stéphane Varré, J. Delahaye, Eric Rivals
1998German Conference on Bioinformatics29 citations
Semantic Scholar
ProCARs: Progressive Reconstruction of Ancestral Gene Orders
A. Perrin, Jean-Stéphane Varré, Samuel Blanquart, Aïda Ouangraoua
2014BMC Genomics22 citations Open access
Semantic Scholar
Retention-error patterns in complex alphanumeric serial-recall tasks
F. Mathy, Jean-Stéphane Varré
2013Memory16 citations
Semantic Scholar
Bit-Parallel Multiple Pattern Matching
T. Tran, Mathieu Giraud, Jean-Stéphane Varré
2011Parallel Processing and Applied Mathematics14 citations Open access
Semantic Scholar
Manycore High-Performance Computing in Bioinformatics
Jean-Stéphane Varré, B. Schmidt, S. Janot, Mathieu Giraud
201113 citations Open access
Semantic Scholar
Reproductive isolation among lineages of Silene nutans (Caryophyllaceae): A potential involvement of plastid-nuclear incompatibilities.
Zoé Postel, C. Poux, S. Gallina, Jean-Stéphane Varré +5 more
2022Molecular Phylogenetics and Evolution12 citations Open access
Semantic Scholar
Assisted transcriptome reconstruction and splicing orthology
Samuel Blanquart, Jean-Stéphane Varré, Paul Guertin, A. Perrin +2 more
2016BMC Genomics11 citations Open access
Semantic Scholar
Parallel Position Weight Matrices Algorithms
Mathieu Giraud, Jean-Stéphane Varré
20092009 Eighth International Symposium on Parallel and Distributed Computing11 citations Open access
Semantic Scholar
Genome dedoubling by DCJ and reversal
Antoine Thomas, Jean-Stéphane Varré, Aïda Ouangraoua
2011BMC Bioinformatics10 citations Open access
Semantic Scholar
The decoupled evolution of the organellar genomes of Silene nutans leads to distinct roles in the speciation process.
Zoé Postel, Daniel B. Sloan, S. Gallina, Cécile Godé +5 more
2023New Phytologist8 citations Open access
Semantic Scholar
Self-overlapping Occurrences and Knuth-Morris-Pratt Algorithm for Weighted Matching
A. Liefooghe, H. Touzet, Jean-Stéphane Varré
2009Language and Automata Theory and Applications8 citations
Semantic Scholar
Use of whole-genome sequencing in the molecular investigation of care-associated HCoV-OC43 infections in a hematopoietic stem cell transplant unit
D. Beury, Léa Fléchon, F. Maurier, S. Caboche +7 more
2019Journal of Clinical Virology7 citations Open access
Semantic Scholar
Graph analysis of fragmented long-read bacterial genome assemblies
P. Marijon, R. Chikhi, Jean-Stéphane Varré
2019Bioinform.6 citations Open access
Semantic Scholar
The Transformation Distance
Jean-Stéphane Varré, J. Delahaye, Eric Rivals
19976 citations
Semantic Scholar
Predicting isoform transcripts: What does the comparison of known transcripts in human, mouse and dog tell us?
Nicolas Guillaudeux, C. Belleannée, Samuel Blanquart, Jean-Stéphane Varré
20195 citations Open access
Semantic Scholar
Biomanycores, a repository of interoperable open-source code for many-cores bioinformatics
Jean-Stéphane Varré, S. Janot, Mathieu Giraud
20093 citations
Semantic Scholar
Perfect Hashing Structures for Parallel Similarity Searches
T. Tran, Mathieu Giraud, Jean-Stéphane Varré
20152015 IEEE International Parallel and Distributed Processing Symposium Workshop2 citations Open access
Semantic Scholar
Single Tandem Halving by Block Interchange
Antoine Thomas, Aïda Ouangraoua, Jean-Stéphane Varré
2012International Joint Conference on Biomedical Engineering Systems and Technologies2 citations
Semantic Scholar
Biomanycores, open-source parallel code for many-core bioinformatics
Mathieu Giraud, S. Janot, Jean-Frédéric Berthelot, Charles Deltel +4 more
20111 citations
Semantic Scholar
RNA-tailor: accurate gene-level identification of transcript isoform diversity from long reads
L. Marchand, Hélène Touzet, Jean-Stéphane Varré
2025bioRxiv0 citations Open access
Semantic Scholar
Debugging long-read genome and metagenome assemblies using string graph analysis
P. Marijon, Jean-Stéphane Varré, R. Chikhi
20170 citations
Semantic Scholar
biomanycores.org: a repository of interoperable open-source code for many-core bioinformatics
Jean-Frédéric Berthelot, Charles Deltel, Mathieu Giraud, S. Janot +4 more
20110 citations
Semantic Scholar
Algorithms for large-scale sequence analysis for molecular biology
G. Kucherov, H. Touzet, Axelle Magnier, Sandrine Catillon +24 more
20070 citations
Semantic Scholar

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