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Matthew C. Hale · SciRah

Researcher profile · Semantic Scholar

Matthew C. Hale

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Matthew C. Hale — researcher profile on SciRah

h-index: 18
Works: 39
Citations: 1,350

Most-cited papers

Gene mapping in the wild with SNPs: guidelines and future directions
J. Slate, J. Gratten, D. Beraldi, J. Stapley +2 more
2009Genetica185 citations
Semantic Scholar
Next-generation pyrosequencing of gonad transcriptomes in the polyploid lake sturgeon (Acipenser fulvescens): the relative merits of normalization and rarefaction in gene discovery
Matthew C. Hale, Cory R. Mccormick, J. Jackson, J. DeWoody
2009BMC Genomics161 citations Open access
Semantic Scholar
Genetic Architecture of Migration-Related Traits in Rainbow and Steelhead Trout, Oncorhynchus mykiss
Benjamin C. Hecht, F. Thrower, Matthew C. Hale, Michael R. Miller +1 more
2012G3: Genes, Genomes, Genetics115 citations Open access
Semantic Scholar
Evaluating Adaptive Divergence Between Migratory and Nonmigratory Ecotypes of a Salmonid Fish, Oncorhynchus mykiss
Matthew C. Hale, F. Thrower, E. Berntson, Michael R. Miller +1 more
2013G3: Genes, Genomes, Genetics102 citations Open access
Semantic Scholar
A predicted microsatellite map of the passerine genome based on chicken–passerine sequence similarity
D. Dawson, T. Burke, B. Hansson, J. Pandhal +3 more
2006Molecular Ecology100 citations
Semantic Scholar
Discovery and evaluation of candidate sex-determining genes and xenobiotics in the gonads of lake sturgeon (Acipenser fulvescens)
Matthew C. Hale, J. Jackson, J. DeWoody
2010Genetica80 citations
Semantic Scholar
Evidence of inbreeding depression but not inbreeding avoidance in a natural house sparrow population
A. Billing, A. Lee, S. Skjelseth, Å. Borg +6 more
2012Molecular Ecology63 citations
Semantic Scholar
Differential gene expression in male and female rainbow trout embryos prior to the onset of gross morphological differentiation of the gonads
Matthew C. Hale, Peng Xu, Julie Scardina, P. A. Wheeler +2 more
2011BMC Genomics63 citations Open access
Semantic Scholar
Simple sequence repeats in zebra finch (Taeniopygia guttata) expressed sequence tags: a new resource for evolutionary genetic studies of passerines
J. Slate, Matthew C. Hale, T. Birkhead
2007BMC Genomics63 citations Open access
Semantic Scholar
A priori and a posteriori approaches for finding genes of evolutionary interest in non-model species: osmoregulatory genes in the kidney transcriptome of the desert rodent Dipodomys spectabilis (banner-tailed kangaroo rat).
Nicholas J. Marra, S. Eo, Matthew C. Hale, P. Waser +1 more
2012Comparative Biochemistry and Physiology - Part D:Genomics and Proteomics41 citations Open access
Semantic Scholar
Ontogenetic changes in embryonic and brain gene expression in progeny produced from migratory and resident Oncorhynchus mykiss
G. McKinney, Matthew C. Hale, G. Goetz, M. Gribskov +2 more
2015Molecular Ecology39 citations
Semantic Scholar
RNA-seq reveals differential gene expression in the brains of juvenile resident and migratory smolt rainbow trout (Oncorhynchus mykiss).
Matthew C. Hale, G. McKinney, F. Thrower, Krista M. Nichols
2016Comparative Biochemistry and Physiology - Part D:Genomics and Proteomics34 citations Open access
Semantic Scholar
Long-Term Conservation of Ohnologs Through Partial Tetrasomy Following Whole-Genome Duplication in Salmonidae
M. Campbell, Matthew C. Hale, G. McKinney, Krista M. Nichols +1 more
2019G3: Genes, Genomes, Genetics31 citations Open access
Semantic Scholar
Comparative transcriptomics and gene expression in larval tiger salamander (Ambystoma tigrinum) gill and lung tissues as revealed by pyrosequencing.
S. Eo, J. Doyle, Matthew C. Hale, Nicholas J. Marra +2 more
2012Gene26 citations
Semantic Scholar
Genomic evidence for domestication selection in three hatchery populations of Chinook salmon, Oncorhynchus tshawytscha
Natasha S Howe, Matthew C. Hale, Charles D. Waters, Sara M. Schaal +2 more
2024Evolutionary Applications19 citations Open access
Semantic Scholar
Using RNA-seq to determine patterns of sex-bias in gene expression in the brain of the sex-role reversed Gulf Pipefish (Syngnathus scovelli).
A. Beal, F. Martin, Matthew C. Hale
2017Marine Genomics19 citations
Semantic Scholar
Evidence of sex-bias in gene expression in the brain transcriptome of two populations of rainbow trout (Oncorhynchus mykiss) with divergent life histories
Matthew C. Hale, G. McKinney, F. Thrower, Krista M. Nichols
2018PLoS ONE18 citations Open access
Semantic Scholar
Small Subordinate Male Advantage in the Zebrafish
P. Watt, A. Skinner, Matthew C. Hale, S. Nakagawa +1 more
201118 citations
Semantic Scholar
A large-scale chromosomal inversion is not associated with life history development in rainbow trout from Southeast Alaska
Spencer Y. Weinstein, F. Thrower, Krista M. Nichols, Matthew C. Hale
2019PLoS ONE17 citations Open access
Semantic Scholar
A comparison of synteny and gene order on the homologue of chicken chromosome 7 between two passerine species and between passerines and chicken
Matthew C. Hale, H. Jensen, T. Birkhead, Terry A. Burke +1 more
2008Cytogenetic and Genome Research17 citations
Semantic Scholar
SNP‐SCALE: SNP scoring by colour and length exclusion
G. Hinten, Matthew C. Hale, J. Gratten, Jim A. Mossman +3 more
200717 citations Open access
Semantic Scholar
A candidate chromosome inversion in Arctic charr (Salvelinus alpinus) identified by population genetic analysis techniques
Matthew C. Hale, M. Campbell, G. McKinney
2021G316 citations Open access
Semantic Scholar
Comparative Genomic Analyses and a Novel Linkage Map for Cisco (Coregonus artedi) Provide Insights into Chromosomal Evolution and Rediploidization Across Salmonids
D. Blumstein, M. Campbell, Matthew C. Hale, B. Sutherland +3 more
2020G313 citations Open access
Semantic Scholar
Genomic structural variation in Barramundi Perch Lates calcarifer and potential roles in speciation and adaptation
Matthew A. Campbell, Matthew C. Hale
2024G311 citations Open access
Semantic Scholar
Microsatellite analyses across three diverse vertebrate transcriptomes (Acipenser fulvescens, Ambystoma tigrinum, and Dipodomys spectabilis).
J. Doyle, Gregor‐Fausto Siegmund, Joseph D. Ruhl, S. Eo +4 more
2013Genome11 citations
Semantic Scholar
Transcriptional profiling of the clpX mutant in Bacillus anthracis reveals regulatory connection with the lrgAB operon.
K. Claunch, M. Bush, Christopher R. Evans, Jacob A. Malmquist +2 more
2018Microbiology10 citations Open access
Semantic Scholar
Characterization and distribution of a 14-Mb chromosomal inversion in native populations of rainbow trout (Oncorhynchus mykiss)
Matthew C. Hale, Devon E. Pearse, Matthew A. Campbell
2024G39 citations Open access
Semantic Scholar
Comparative genomics of rainbow trout (Oncorhynchus mykiss): Is the genetic architecture of migratory behavior conserved among populations?
Catherine I. Clare, Krista M. Nichols, F. Thrower, E. Berntson +1 more
2023Ecology and Evolution9 citations Open access
Semantic Scholar
Using Linkage Maps as a Tool To Determine Patterns of Chromosome Synteny in the Genus Salvelinus
Matthew C. Hale, G. McKinney, C. L. Bell, Krista M. Nichols
2017G3: Genes, Genomes, Genetics8 citations Open access
Semantic Scholar
Molecular Approaches in Natural Resource Conservation and Management: Vertebrate sex-determining genes and their potential utility in conservation, with particular emphasis on fishes
J. DeWoody, Matthew C. Hale, J. Avise
20108 citations
Semantic Scholar
Mapping and Expression of Candidate Genes for Development Rate in Rainbow Trout (Oncorhynchus mykiss).
Matthew C. Hale, John A. Colletti, S. Gahr, Julie Scardina +7 more
2014Journal of Heredity7 citations Open access
Semantic Scholar
Genomics reveal the origins and current structure of a genetically depauperate freshwater species in its introduced Alaskan range
M. Campbell, Matthew C. Hale, Chase S. Jalbert, K. Dunker +4 more
2023Evolutionary Applications6 citations Open access
Semantic Scholar
Erratum to: Gene mapping in the wild with SNPs: guidelines and future directions
J. Slate, J. Gratten, D. Beraldi, J. Stapley +2 more
2010Genetica5 citations Open access
Semantic Scholar
Differential gene expression associated with behavioral variation in ecotypes of Lake Superior brook trout (Salvelinus fontinalis).
Matthew C. Hale, R. Mclaughlin, C. Wilson, R. Mackereth +1 more
2021Comparative Biochemistry and Physiology - Part D:Genomics and Proteomics3 citations
Semantic Scholar
Comparative genomic analyses and a novel linkage map for cisco (Coregonus artedi) provides insight into chromosomal evolution and rediploidization across salmonids
D. Blumstein, M. Campbell, Matthew C. Hale, B. Sutherland +3 more
2019bioRxiv3 citations Open access
Semantic Scholar
Using Genetic Data to Determine Origin for Out‐Migrating Smolt and Returning Adult Steelhead Trout (Oncorhynchus mykiss) in a Southeast Alaska Drainage
Evan J. Barfuss, Bridey E Brown, S. Sachdeva, Asher B. Smith +4 more
2024Ecology and Evolution2 citations Open access
Semantic Scholar
The Genetics and Epigenetics of Life History and Reproduction: Fish
Matthew C. Hale
20160 citations
Semantic Scholar
GENETIC ANALYSIS OF LAKE STURGEON TISSUE RELATIVE TO SEX DETERMINATION
Matthew C. Hale
20100 citations
Semantic Scholar
SNP-SCALE: SNP scoring by colour and length exclusion: TECHNICAL ARTICLE
G. Hinten, Matthew C. Hale, J. Gratten, Jim A. Mossman +3 more
20070 citations
Semantic Scholar

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