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A. Barkan · SciRah

Researcher profile · Semantic Scholar

A. Barkan

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A. Barkan — researcher profile on SciRah

h-index: 58
Works: 153
Citations: 11K

Most-cited papers

Pentatricopeptide repeat proteins in plants.
A. Barkan, I. Small
2014Annual Review of Plant Biology965 citations Open access
Semantic Scholar
A Combinatorial Amino Acid Code for RNA Recognition by Pentatricopeptide Repeat Proteins
A. Barkan, Margarita Rojas, Sota Fujii, Aaron Yap +3 more
2012PLoS Genetics531 citations Open access
Semantic Scholar
Site‐specific binding of a PPR protein defines and stabilizes 5′ and 3′ mRNA termini in chloroplasts
J. Pfalz, O. Bayraktar, J. Přikryl, A. Barkan
2009EMBO Journal357 citations Open access
Semantic Scholar
Mechanism of RNA stabilization and translational activation by a pentatricopeptide repeat protein
J. Přikryl, Margarita Rojas, G. Schuster, A. Barkan
2010Proceedings of the National Academy of Sciences of the United States of America300 citations Open access
Semantic Scholar
Expression of Plastid Genes: Organelle-Specific Elaborations on a Prokaryotic Scaffold1
A. Barkan
2011Plant Physiology243 citations Open access
Semantic Scholar
Nucleoid-Enriched Proteomes in Developing Plastids and Chloroplasts from Maize Leaves: A New Conceptual Framework for Nucleoid Functions1[C][W][OA]
W. Majeran, G. Friso, Yukari Asakura, Xian Qu +5 more
2011Plant Physiology242 citations Open access
Semantic Scholar
The Pentatricopeptide Repeat Protein PPR5 Stabilizes a Specific tRNA Precursor in Maize Chloroplasts
Susanne Beick, Christian Schmitz-Linneweber, Rosalind Williams-Carrier, B. Jensen +1 more
2008Molecular and Cellular Biology194 citations Open access
Semantic Scholar
A member of the Whirly family is a multifunctional RNA- and DNA-binding protein that is essential for chloroplast biogenesis
J. Přikryl, K. P. Watkins, G. Friso, K. V. van Wijk +1 more
2008Nucleic Acids Research182 citations Open access
Semantic Scholar
An RNA recognition motif-containing protein is required for plastid RNA editing in Arabidopsis and maize
Tao Sun, Arnaud Germain, L. Giloteaux, K. Hammani +3 more
2013Proceedings of the National Academy of Sciences of the United States of America145 citations Open access
Semantic Scholar
A plant-specific RNA-binding domain revealed through analysis of chloroplast group II intron splicing
Tiffany S. Kroeger, K. P. Watkins, G. Friso, K. V. van Wijk +1 more
2009Proceedings of the National Academy of Sciences of the United States of America138 citations Open access
Semantic Scholar
A Rapid Ribosome Profiling Method Elucidates Chloroplast Ribosome Behavior in Vivo[C][W]
Reimo Zoschke, K. P. Watkins, A. Barkan
2013The Plant Cell137 citations Open access
Semantic Scholar
Use of Illumina sequencing to identify transposon insertions underlying mutant phenotypes in high-copy Mutator lines of maize.
Rosalind Williams-Carrier, Nicholas Stiffler, Susan Belcher, Tiffany S. Kroeger +4 more
2010The Plant Journal136 citations Open access
Semantic Scholar
Protein-mediated protection as the predominant mechanism for defining processed mRNA termini in land plant chloroplasts
P. Zhelyazkova, K. Hammani, Margarita Rojas, R. Voelker +3 more
2011Nucleic Acids Research135 citations Open access
Semantic Scholar
Sequence-specific binding of a chloroplast pentatricopeptide repeat protein to its native group II intron ligand.
Rosalind Williams-Carrier, Tiffany S. Kroeger, A. Barkan
2008RNA: A publication of the RNA Society124 citations Open access
Semantic Scholar
Chloroplast RH3 DEAD Box RNA Helicases in Maize and Arabidopsis Function in Splicing of Specific Group II Introns and Affect Chloroplast Ribosome Biogenesis1[W][OA]
Yukari Asakura, Erin R. Galarneau, K. P. Watkins, A. Barkan +1 more
2012Plant Physiology121 citations Open access
Semantic Scholar
Dynamics of Chloroplast Translation during Chloroplast Differentiation in Maize
P. Chotewutmontri, A. Barkan
2016PLoS Genetics118 citations Open access
Semantic Scholar
A Ribonuclease III Domain Protein Functions in Group II Intron Splicing in Maize Chloroplasts[W]
K. P. Watkins, Tiffany S. Kroeger, A. Cooke, Rosalind Williams-Carrier +4 more
2007The Plant Cell Online116 citations Open access
Semantic Scholar
A short PPR protein required for the splicing of specific group II introns in angiosperm chloroplasts.
Anastassia Khrouchtchova, R. Monde, A. Barkan
2012RNA: A publication of the RNA Society108 citations Open access
Semantic Scholar
RNA processing and decay in plastids
Arnaud Germain, Amber M. Hotto, A. Barkan, David B. Stern
2013Wiley Interdisciplinary Reviews - RNA106 citations
Semantic Scholar
A PORR domain protein required for rpl2 and ccmF(C) intron splicing and for the biogenesis of c-type cytochromes in Arabidopsis mitochondria.
C. D. Francs-Small, Tiffany S. Kroeger, Michal Zmudjak, Oren Ostersetzer-Biran +3 more
2012The Plant Journal99 citations
Semantic Scholar
RNA binding and RNA remodeling activities of the half-a-tetratricopeptide (HAT) protein HCF107 underlie its effects on gene expression
K. Hammani, W. B. Cook, A. Barkan
2012Proceedings of the National Academy of Sciences of the United States of America96 citations Open access
Semantic Scholar
The pentatricopeptide repeat-SMR protein ATP4 promotes translation of the chloroplast atpB/E mRNA.
Reimo Zoschke, Tiffany S. Kroeger, Susan Belcher, M. Schöttler +2 more
2012The Plant Journal83 citations Open access
Semantic Scholar
Ribulose-1,5-Bis-Phosphate Carboxylase/Oxygenase Accumulation Factor1 Is Required for Holoenzyme Assembly in Maize[C][W]
Leila Feiz, Rosalind Williams-Carrier, K. Wostrikoff, Susan Belcher +2 more
2012The Plant Cell83 citations Open access
Semantic Scholar
Codon Optimization to Enhance Expression Yields Insights into Chloroplast Translation1[OPEN]
Kwang-Chul Kwon, H. Chan, I. R. León, Rosalind Williams-Carrier +2 more
2016Plant Physiology80 citations Open access
Semantic Scholar
Multilevel effects of light on ribosome dynamics in chloroplasts program genome-wide and psbA-specific changes in translation
P. Chotewutmontri, A. Barkan
2018PLoS Genetics79 citations Open access
Semantic Scholar
Genome-wide analysis of thylakoid-bound ribosomes in maize reveals principles of cotranslational targeting to the thylakoid membrane
Reimo Zoschke, A. Barkan
2015Proceedings of the National Academy of Sciences of the United States of America74 citations Open access
Semantic Scholar
The PPR-SMR protein PPR53 enhances the stability and translation of specific chloroplast RNAs in maize
Reimo Zoschke, K. P. Watkins, Rafael G Miranda, A. Barkan
2016The Plant Journal72 citations Open access
Semantic Scholar
Two CRM protein subfamilies cooperate in the splicing of group IIB introns in chloroplasts.
Yukari Asakura, O. Bayraktar, A. Barkan
2008RNA: A publication of the RNA Society70 citations Open access
Semantic Scholar
Large-scale genetic analysis of chloroplast biogenesis in maize.
Susan Belcher, Rosalind Williams-Carrier, Nicholas Stiffler, A. Barkan
2015Biochimica et Biophysica Acta69 citations Open access
Semantic Scholar
Effects of Reduced Chloroplast Gene Copy Number on Chloroplast Gene Expression in Maize1[W][OA]
Dylan B. Udy, Susan Belcher, Rosalind Williams-Carrier, J. Gualberto +1 more
2012Plant Physiology68 citations Open access
Semantic Scholar
A Thylakoid Membrane Protein Harboring a DnaJ-type Zinc Finger Domain Is Required for Photosystem I Accumulation in Plants*
Rikard Fristedt, Rosalind Williams-Carrier, S. Merchant, A. Barkan
2014Journal of Biological Chemistry66 citations Open access
Semantic Scholar
Update on Expression of Plastid Genes Expression of Plastid Genes : Organelle-Specific Elaborations on a Prokaryotic Scaffold 1
A. Barkan
201165 citations
Semantic Scholar
A protein with an inactive pterin-4a-carbinolamine dehydratase domain is required for Rubisco biogenesis in plants.
Leila Feiz, Rosalind Williams-Carrier, Susan Belcher, Monica Montano +2 more
2014The Plant Journal64 citations Open access
Semantic Scholar
Light-induced psbA translation in plants is triggered by photosystem II damage via an assembly-linked autoregulatory circuit
P. Chotewutmontri, A. Barkan
2020Proceedings of the National Academy of Sciences of the United States of America63 citations Open access
Semantic Scholar
Engineered PPR proteins as inducible switches to activate the expression of chloroplast transgenes
Margarita Rojas, Qi-Guo Yu, Rosalind Williams-Carrier, P. Maliga +1 more
2019Nature Plants62 citations
Semantic Scholar
The solution structure of the pentatricopeptide repeat protein PPR10 upon binding atpH RNA
B. S. Gully, N. Cowieson, W. Stanley, K. Shearston +3 more
2015Nucleic Acids Research60 citations Open access
Semantic Scholar
A PPR protein in the PLS subfamily stabilizes the 5′-end of processed rpl16 mRNAs in maize chloroplasts
K. Hammani, M. Takenaka, Rafael G Miranda, A. Barkan
2016Nucleic Acids Research58 citations Open access
Semantic Scholar
ZmpTAC12 binds single‐stranded nucleic acids and is essential for accumulation of the plastid‐encoded polymerase complex in maize
J. Pfalz, U. Holtzegel, A. Barkan, W. Weisheit +2 more
2015New Phytologist56 citations Open access
Semantic Scholar
RNA-binding specificity landscapes of designer pentatricopeptide repeat proteins elucidate principles of PPR–RNA interactions
Rafael G Miranda, James J. McDermott, A. Barkan
2017Nucleic Acids Research54 citations Open access
Semantic Scholar
APO1 Promotes the Splicing of Chloroplast Group II Introns and Harbors a Plant-Specific Zinc-Dependent RNA Binding Domain[W]
K. P. Watkins, Margarita Rojas, G. Friso, K. V. van Wijk +2 more
2011The Plant Cell54 citations Open access
Semantic Scholar
RNA splicing and RNA editing in chloroplasts
Christian Schmitz-Linneweber, A. Barkan
200754 citations
Semantic Scholar
A Major Role for the Plastid-Encoded RNA Polymerase Complex in the Expression of Plastid Transfer RNAs1[W][OPEN]
Rosalind Williams-Carrier, Reimo Zoschke, Susan Belcher, J. Pfalz +1 more
2013Plant Physiology51 citations Open access
Semantic Scholar
Ribonucleoprotein Capture by in Vivo Expression of a Designer Pentatricopeptide Repeat Protein in Arabidopsis[OPEN]
James J. McDermott, K. P. Watkins, Rosalind Williams-Carrier, A. Barkan
2019The Plant Cell46 citations Open access
Semantic Scholar
Unexpected functional versatility of the pentatricopeptide repeat proteins PGR3, PPR5 and PPR10
Margarita Rojas, H. Ruwe, Rafael G Miranda, Reimo Zoschke +3 more
2018Nucleic Acids Research46 citations Open access
Semantic Scholar
Engineered RNA-binding protein for transgene activation in non-green plastids
Qi-Guo Yu, A. Barkan, P. Maliga
2019Nature Plants43 citations
Semantic Scholar
Genome-wide analysis of RNA-protein interactions in plants.
A. Barkan
2009Methods in molecular biology43 citations
Semantic Scholar
RNA-binding specificity landscape of the pentatricopeptide repeat protein PPR10
Rafael G Miranda, Margarita Rojas, Michael P. Montgomery, K. Gribbin +1 more
2017RNA: A publication of the RNA Society40 citations Open access
Semantic Scholar
Stabilization and translation of synthetic operon‐derived mRNAs in chloroplasts by sequences representing PPR protein‐binding sites
J. Legen, Stephanie Ruf, Xenia Kroop, Gong-Wei Wang +3 more
2018The Plant Journal37 citations Open access
Semantic Scholar
Dynamic localization of SPO11-1 and conformational changes of meiotic axial elements during recombination initiation of maize meiosis
Jia-Chi Ku, Arnaud Ronceret, I. Golubovskaya, Ding-Hua Lee +10 more
2018PLoS Genetics35 citations Open access
Semantic Scholar
required to maintain repression2 Is a Novel Protein That Facilitates Locus-Specific Paramutation in Maize[W]
Joy-El R. Barbour, I. Liao, J. L. Stonaker, Jana P. Lim +8 more
2012The Plant Cell35 citations Open access
Semantic Scholar

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