Jing-Qi Wang

Most-cited papers

CLAMP – a toolkit for efficiently building customized clinical natural language processing pipelines
Ergin Soysal, Jing-Qi Wang, Min Jiang, Yonghui Wu +3 more
2017J. Am. Medical Informatics Assoc.349 citations Open access
Semantic Scholar
Enhancing Clinical Concept Extraction with Contextual Embedding
Yuqi Si, Jing-Qi Wang, Hua Xu, Kirk Roberts
2019J. Am. Medical Informatics Assoc.332 citations Open access
Semantic Scholar
A systematic analysis of FDA-approved anticancer drugs
Jingchun Sun, Qiang Wei, Yu-Bo Zhou, Jing-Qi Wang +2 more
2017BMC Systems Biology288 citations Open access
Semantic Scholar
A study of deep learning approaches for medication and adverse drug event extraction from clinical text
Qiang Wei, Zongcheng Ji, Zhi-Heng Li, Jingcheng Du +8 more
2019J. Am. Medical Informatics Assoc.133 citations Open access
Semantic Scholar
CD-REST: a system for extracting chemical-induced disease relation in literature
Jun Xu, Yonghui Wu, Yao-Yun Zhang, Jing-Qi Wang +2 more
2016Database J. Biol. Databases Curation84 citations Open access
Semantic Scholar
Relation Extraction from Clinical Narratives Using Pre-trained Language Models
Qiang Wei, Zongcheng Ji, Yuqi Si, Jingcheng Du +6 more
2019American Medical Informatics Association Annual Symposium79 citations
Semantic Scholar
Citation Sentiment Analysis in Clinical Trial Papers
Jun Xu, Yao-Yun Zhang, Yonghui Wu, Jing-Qi Wang +2 more
2015American Medical Informatics Association Annual Symposium59 citations
Semantic Scholar
UTH_CCB: A report for SemEval 2014 – Task 7 Analysis of Clinical Text
Yao-Yun Zhang, Jing-Qi Wang, Bu-Zhou Tang, Yonghui Wu +3 more
2014International Workshop on Semantic Evaluation56 citations Open access
Semantic Scholar
UTHealth at SemEval-2016 Task 12: an End-to-End System for Temporal Information Extraction from Clinical Notes
Hee-Jin Lee, Hua Xu, Jing-Qi Wang, Yao-Yun Zhang +3 more
2016International Workshop on Semantic Evaluation55 citations Open access
Semantic Scholar
Extraction of BI-RADS findings from breast ultrasound reports in Chinese using deep learning approaches
Shumei Miao, Tingyu Xu, Yonghui Wu, Hui Xie +11 more
2018Int. J. Medical Informatics40 citations
Semantic Scholar
Chemical named entity recognition in patents by domain knowledge and unsupervised feature learning
Yao-Yun Zhang, Jun Xu, Hui Chen, Jing-Qi Wang +3 more
2016Database J. Biol. Databases Curation40 citations Open access
Semantic Scholar
A study of entity-linking methods for normalizing Chinese diagnosis and procedure terms to ICD codes
Qiong Wang, Zongcheng Ji, Jing-Qi Wang, S. Wu +7 more
2020Journal of Biomedical Informatics39 citations Open access
Semantic Scholar
Prompt Tuning in Biomedical Relation Extraction
Jian-Ping He, Fang Li, Jian-Fu Li, Xin-Yue Hu +7 more
2024Journal of Healthcare Informatics Research37 citations Open access
Semantic Scholar
UTH_CCB System for Adverse Drug Reaction Extraction from Drug Labels at TAC-ADR 2017
Jun Xu, Hee-Jin Lee, Zongcheng Ji, Jing-Qi Wang +2 more
2017Text Analysis Conference37 citations
Semantic Scholar
A comparison of conditional random fields and structured support vector machines for chemical entity recognition in biomedical literature
Bu-Zhou Tang, Yudong Feng, Xiaolong Wang, Yonghui Wu +4 more
2015Journal of Cheminformatics36 citations Open access
Semantic Scholar
Extracting postmarketing adverse events from safety reports in the vaccine adverse event reporting system (VAERS) using deep learning
Jingcheng Du, Yang Xiang, M. Sankaranarayanapillai, Meng Zhang +6 more
2021J. Am. Medical Informatics Assoc.34 citations Open access
Semantic Scholar
Accurate Identification of Fatty Liver Disease in Data Warehouse Utilizing Natural Language Processing
Joseph S. Redman, Yamini Natarajan, J. Hou, Jing-Qi Wang +7 more
2017Digestive Diseases and Sciences33 citations
Semantic Scholar
An active learning-enabled annotation system for clinical named entity recognition
Yukun Chen, Thomas Lask, Qiao-Zhu Mei, Qingxia Chen +7 more
2017BMC Medical Informatics and Decision Making31 citations Open access
Semantic Scholar
Domain Adaptation for Semantic Role Labeling of Clinical Text
Yao-Yun Zhang, Bu-Zhou Tang, Min Jiang, Jing-Qi Wang +2 more
2015American Medical Informatics Association Annual Symposium28 citations Open access
Semantic Scholar
UTH-CCB: The Participation of the SemEval 2015 Challenge – Task 14
Jun Xu, Yao-Yun Zhang, Jing-Qi Wang, Yonghui Wu +3 more
2015International Workshop on Semantic Evaluation26 citations Open access
Semantic Scholar
Recognizing Disjoint Clinical Concepts in Clinical Text Using Machine Learning-based Methods
Bu-Zhou Tang, Qing-Cai Chen, Xiaolong Wang, Yonghui Wu +4 more
2015American Medical Informatics Association Annual Symposium21 citations
Semantic Scholar
Leveraging syntactic and semantic graph kernels to extract pharmacokinetic drug drug interactions from biomedical literature
Yao-Yun Zhang, Heng-Yi Wu, Jun Xu, Jing-Qi Wang +3 more
2016BMC Systems Biology20 citations Open access
Semantic Scholar
Toward a normalized clinical drug knowledge base in China—applying the RxNorm model to Chinese clinical drugs
Li Wang, Yao-Yun Zhang, Min Jiang, Jing-Qi Wang +6 more
2018J. Am. Medical Informatics Assoc.17 citations Open access
Semantic Scholar
Melaxtech: A report for CLEF 2020 - ChEMU Task of Chemical Reaction Extraction from Patent
Jing-Qi Wang, Yuan-Kai Ren, Zhi Zhang, Yao-Yun Zhang
2020Conference and Labs of the Evaluation Forum14 citations
Semantic Scholar
Developing Customizable Cancer Information Extraction Modules for Pathology Reports Using CLAMP
Ergin Soysal, J. Warner, Jing-Qi Wang, Min Jiang +14 more
2019Medinfo14 citations Open access
Semantic Scholar
Adapting Word Embeddings from Multiple Domains to Symptom Recognition from Psychiatric Notes
Yao-Yun Zhang, Hee-Jin Li, Jing-Qi Wang, T. Cohen +2 more
2018AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science14 citations
Semantic Scholar
COVID-19 trial graph: a linked graph for COVID-19 clinical trials
Jingcheng Du, Qing Wang, Jing-Qi Wang, Prerana Ramesh +3 more
2021J. Am. Medical Informatics Assoc.11 citations Open access
Semantic Scholar
Opioid2FHIR: A system for extracting FHIR-compatible opioid prescriptions from clinical text
Jing-Qi Wang, W. Mathews, Huy Anh Pham, Hua Xu +1 more
2020IEEE International Conference on Bioinformatics and Biomedicine9 citations
Semantic Scholar
Semantic Role Labeling of Clinical Text: Comparing Syntactic Parsers and Features
Yao-Yun Zhang, Min Jiang, Jing-Qi Wang, Hua Xu
2016American Medical Informatics Association Annual Symposium9 citations
Semantic Scholar
Extracting drug-enzyme relation from literature as evidence for drug drug interaction
Yao-Yun Zhang, Heng-Yi Wu, Jingcheng Du, Jun Xu +4 more
2016Journal of Biomedical Semantics9 citations Open access
Semantic Scholar
Chemical-Protein Relation Extraction with Pre-trained Prompt Tuning
Jianping He, Fang Li, Xin-Yue Hu, Jianfu Li +6 more
2022IEEE International Conference on Healthcare Informatics5 citations Open access
Semantic Scholar
Clinical Language Annotation, Modeling, and Processing Toolkit (CLAMP) - a user-centric NLP system
Ergin Soysal, Jing-Qi Wang, Min Jiang, Yonghui Wu +1 more
2015American Medical Informatics Association Annual Symposium5 citations
Semantic Scholar
From Tokenization to Self-Supervision: Building a High-Performance Information Extraction System for Chemical Reactions in Patents
Jing-Qi Wang, Yuan-Kai Ren, Zhi Zhang, Hua Xu +1 more
2021Frontiers in Research Metrics and Analytics4 citations Open access
Semantic Scholar
Recognizing Chemical Entities in Biomedical Literature using Conditional Random Fields and Structured Support Vector Machines
Bu-Zhou Tang, Xiao-Long Wang, Yonghui Wu, Min Jiang +2 more
20133 citations
Semantic Scholar
Utilizing Natural Language Processing (NLP) to Accurately Identify Fatty Liver Disease
Joseph S. Redman, Yamini Natarajan, Jing-Qi Wang, Muzammil Hanif +7 more
20172 citations
Semantic Scholar
Tu1117 - using Natural Language Processing to Accurately Identify Dysplasia in Pathology Reports for Patients with Barrett's Esophagus
A. Thrift, Yamini Natarajan, Nabil M. Mansour, Jing-Qi Wang +3 more
20181 citations
Semantic Scholar
Integrating Multiple On-line Knowledge Bases for Disease-Lab Test Relation Extraction
Yao-Yun Zhang, Ergin Soysal, S. Moon, Jing-Qi Wang +2 more
2015AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science1 citations
Semantic Scholar
VITAL: A semantic search engine for clinical text
Jing-Qi Wang, Yao-Yun Zhang
2021American Medical Informatics Association Annual Symposium0 citations
Semantic Scholar
Comparison of Natural Language Processing Approaches Identifying Opioid Overdose from Clinical Notes for Emergency Department
V. Zhu, Jing-Qi Wang, J. McCauley, L. Jennings +3 more
2021American Medical Informatics Association Annual Symposium0 citations
Semantic Scholar
LANN: An integrated online annotation tool for information extraction
Yao-Yun Zhang, Jing-Qi Wang, Hua Xu
2020American Medical Informatics Association Annual Symposium0 citations
Semantic Scholar
CLAMP-ATR: A deep learning pipeline for attribute recognition of clinical concepts
Jing-Qi Wang, Yao-Yun Zhang, Hua Xu
2019American Medical Informatics Association Annual Symposium0 citations
Semantic Scholar
CLAMP-PA: A machine learning based pre-annotation pipeline for corpus construction of clinical concepts
Yao-Yun Zhang, Qiang Wei, Jing-Qi Wang, Hua Xu
2018American Medical Informatics Association Annual Symposium0 citations
Semantic Scholar
Detecting Anatomical Entities in Clinical Text
Jun Xu, Yao-Yun Zhang, Jingcheng Du, Jing-Qi Wang +2 more
2018American Medical Informatics Association Annual Symposium0 citations
Semantic Scholar
CLAMP - A User-Centric Clinical Natural Language Processing Toolkit
Hua Xu, Ergin Soysal, Jing-Qi Wang, Min Jiang +1 more
2017American Medical Informatics Association Annual Symposium0 citations
Semantic Scholar
A Natural Language Processing System for Biomedical Dataset Retrieval
Xiaoling Chen, Jun Xu, Jing-Qi Wang, Anupama E. Gururaj +2 more
2017American Medical Informatics Association Annual Symposium0 citations
Semantic Scholar
Erratum to: Extracting drug-enzyme relation from literature as evidence for drug drug interaction
Yao-Yun Zhang, Heng-Yi Wu, Jingcheng Du, Jun Xu +4 more
2016Journal of Biomedical Semantics0 citations Open access
Semantic Scholar
Applying Active Learning to Clinical Abbreviation Disambiguation in Real Time
S. Moon, Yukun Chen, Jing-Qi Wang, J. Denny +4 more
2016American Medical Informatics Association Annual Symposium0 citations
Semantic Scholar
Real Time Active Learning Study for Clinical Named Entity Recognition
Yukun Chen, S. Moon, T. Lasko, Qiao-Zhu Mei +5 more
2015American Medical Informatics Association Annual Symposium0 citations
Semantic Scholar
Applying Active Learning to Word Sense Disambiguation in a Real-Time Setting
S. Moon, Yukun Chen, Jing-Qi Wang, J. Denny +1 more
2014American Medical Informatics Association Annual Symposium0 citations
Semantic Scholar
Ontology-based Normalization for Disease-Lab test Relation Extraction
Yao-Yun Zhang, Jing-Qi Wang, Cui Tao, Hua Xu
2014International Conference on Biomedical Ontology0 citations
Semantic Scholar