Roux-Cil Ferreira

Most-cited papers

1. Structural Rearrangements Maintain the Glycan Shield of an HIV-1 Envelope Trimer After the Loss of a Glycan

   Roux-Cil Ferreira, Oliver C. Grant, Thandeka Moyo, J. Dorfman +3 more

   2018Scientific Reports22 citations Open access

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2. CoVizu: Rapid analysis and visualization of the global diversity of SARS-CoV-2 genomes

   Roux-Cil Ferreira, Emmanuel Wong, Gopi Gugan, Kaitlyn E Wade +6 more

   2021bioRxiv16 citations Open access

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3. Combining Viral Genetics and Statistical Modeling to Improve HIV-1 Time-of-Infection Estimation towards Enhanced Vaccine Efficacy Assessment

   Raabya Rossenkhan, M. Rolland, J. P. Labuschagne, Roux-Cil Ferreira +25 more

   2019Viruses14 citations Open access

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4. Chinks in the armor of the HIV-1 Envelope glycan shield: Implications for immune escape from anti-glycan broadly neutralizing antibodies.

   Thandeka Moyo, Roux-Cil Ferreira, Reyaaz Davids, Zarinah Sonday +4 more

   2017Virology13 citations Open access

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5. Association between HIV-1 Nef-mediated MHC-I downregulation and the maintenance of the replication-competent latent viral reservoir in individuals with virally suppressed HIV-1 in Uganda: an exploratory cohort study

   Mitchell J Mumby, J. Prodger, J. Hackman, S. Saraf +25 more

   2025The Lancet Microbe8 citations

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6. Temporary increase in circulating replication-competent latent HIV-infected resting CD4+ T cells after switch to an integrase inhibitor based antiretroviral regimen

   Roux-Cil Ferreira, S. Reynolds, A. Capoferri, O. Baker +23 more

   2024EBioMedicine5 citations Open access

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7. Quantifying the clonality and dynamics of the within-host HIV-1 latent reservoir

   Roux-Cil Ferreira, J. Prodger, A. Redd, A. Poon

   2021Virus Evolution4 citations Open access

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8. Temporary increase in circulating replication-competent latent HIV-infected resting CD4+ T cells after switch to an integrase inhibitor based antiretroviral regimen

   Roux-Cil Ferreira, S. Reynolds, A. Capoferri, O. Baker +23 more

   2023medRxiv3 citations Open access

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9. bayroot: Bayesian sampling of HIV-1 integration dates by root-to-tip regression

   Roux-Cil Ferreira, Emmanuel Wong, A. Poon

   2022bioRxiv3 citations Open access

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10. Molecular source attribution

    Elisa Chao, Connor Chato, R. Vender, Abayomi S. Olabode +2 more

    2022PLoS Comput. Biol.2 citations Open access

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11. Within-host rates of insertion and deletion in the HIV-1 surface envelope glycoprotein

    John Palmer, V. Novitsky, Roux-Cil Ferreira, Art F. Y. Poon

    2023bioRxiv0 citations Open access

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12. Exploring the role of the “glycan-shield” of human immunodeficiency virus in susceptibility to, and escape from, broadly neutralising antibodies

    Roux-Cil Ferreira

    20180 citations

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13. An individual-based model of tsetse fly populations dynamics : modelling an extensive mark-release-recapture experiment

    Roux-Cil Ferreira

    20150 citations

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