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E. V. van Mulligen · SciRah

Researcher profile · Semantic Scholar

E. V. van Mulligen

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E. V. van Mulligen — researcher profile on SciRah

h-index: 33
Works: 144
Citations: 20K

Most-cited papers

The FAIR Guiding Principles for scientific data management and stewardship
M. Wilkinson, M. Dumontier, I. J. Aalbersberg, G. Appleton +49 more
2016Scientific Data17K citations Open access
Semantic Scholar
The EU-ADR corpus: Annotated drugs, diseases, targets, and their relationships
E. V. van Mulligen, A. Fourrier-réglat, D. Gurwitz, M. Molokhia +4 more
2012Journal of Biomedical Informatics167 citations Open access
Semantic Scholar
Calling on a million minds for community annotation in WikiProteins
B. Mons, M. Ashburner, C. Chichester, E. V. van Mulligen +19 more
2008Genome Biology159 citations Open access
Semantic Scholar
Distribution of information in biomedical abstracts and full-text publications
M. Schuemie, M. Weeber, Bob J. A. Schijvenaars, E. V. van Mulligen +4 more
2004Bioinform.138 citations
Semantic Scholar
Using rule-based natural language processing to improve disease normalization in biomedical text
Ning Kang, Bharat Singh, Z. Afzal, E. V. van Mulligen +1 more
2012J. Am. Medical Informatics Assoc.136 citations Open access
Semantic Scholar
Addendum: The FAIR Guiding Principles for scientific data management and stewardship
M. Wilkinson, M. Dumontier, I. J. Aalbersberg, G. Appleton +49 more
2019Scientific Data135 citations Open access
Semantic Scholar
Calbc Silver Standard Corpus
Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, E. V. van Mulligen, Ning Kang +6 more
2010J. Bioinform. Comput. Biol.114 citations
Semantic Scholar
Use of unstructured text in prognostic clinical prediction models: a systematic review
T. Seinen, E. Fridgeirsson, S. Ioannou, D. Jeannetot +9 more
2022medRxiv85 citations Open access
Semantic Scholar
A novel feature-based approach to extract drug-drug interactions from biomedical text
Quoc-Chinh Bui, P. Sloot, E. V. van Mulligen, J. Kors
2014Bioinform.85 citations Open access
Semantic Scholar
Co-occurrence based meta-analysis of scientific texts: retrieving biological relationships between genes
Rob Jelier, G. Jenster, L. Dorssers, C. Christiaan van der Eijk +3 more
2005Bioinform.82 citations Open access
Semantic Scholar
Knowledge-based extraction of adverse drug events from biomedical text
Ning Kang, Bharat Singh, Chinh Bui, Z. Afzal +2 more
2014BMC Bioinformatics81 citations Open access
Semantic Scholar
Microattribution and nanopublication as means to incentivize the placement of human genome variation data into the public domain
G. Patrinos, David N. Cooper, E. V. van Mulligen, Vassiliki Gkantouna +5 more
2012Human Mutation67 citations Open access
Semantic Scholar
A fast rule-based approach for biomedical event extraction
Quoc-Chinh Bui, E. V. van Mulligen, David Campos, J. Kors
2013BioNLP@ACL60 citations
Semantic Scholar
Comparing and combining chunkers of biomedical text
Ning Kang, E. V. van Mulligen, J. Kors
2011Journal of Biomedical Informatics56 citations Open access
Semantic Scholar
Thesaurus-based disambiguation of gene symbols
Bob J. A. Schijvenaars, B. Mons, M. Weeber, M. Schuemie +3 more
2005BMC Bioinformatics56 citations Open access
Semantic Scholar
Novel Protein-Protein Interactions Inferred from Literature Context
H. van Haagen, P. 't Hoen, Alessandro Botelho Bovo, A. de Morrée +9 more
2009PLoS ONE55 citations Open access
Semantic Scholar
Evaluating Social Media Networks in Medicines Safety Surveillance: Two Case Studies
P. Coloma, B. Becker, M. Sturkenboom, E. V. van Mulligen +1 more
2015Drug Safety52 citations Open access
Semantic Scholar
The EU‐ADR Web Platform: delivering advanced pharmacovigilance tools
J. Oliveira, Pedro Lopes, Tiago Nunes, David Campos +14 more
2013Pharmacoepidemiology and Drug Safety51 citations Open access
Semantic Scholar
Drug-Induced Acute Myocardial Infarction: Identifying ‘Prime Suspects’ from Electronic Healthcare Records-Based Surveillance System
P. Coloma, M. Schuemie, G. Trifirò, L. Furlong +20 more
2013PLoS ONE49 citations Open access
Semantic Scholar
Using an ensemble system to improve concept extraction from clinical records
Ning Kang, Z. Afzal, Bharat Singh, E. V. van Mulligen +1 more
2012Journal of Biomedical Informatics47 citations Open access
Semantic Scholar
Erasmus MC at CLEF eHealth 2016: Concept Recognition and Coding in French Texts
E. V. van Mulligen, Z. Afzal, S. Akhondi, Dang Vo +1 more
2016Conference and Labs of the Evaluation Forum44 citations
Semantic Scholar
Literature-based concept profiles for gene annotation: The issue of weighting
Rob Jelier, M. Schuemie, Peter-Jan Roes, E. V. van Mulligen +1 more
2008Int. J. Medical Informatics44 citations
Semantic Scholar
Using Structured Codes and Free-Text Notes to Measure Information Complementarity in Electronic Health Records: Feasibility and Validation Study
T. Seinen, J. Kors, E. V. van Mulligen, P. Rijnbeek
2024Journal of Medical Internet Research42 citations Open access
Semantic Scholar
A dictionary to identify small molecules and drugs in free text
K. Hettne, Rob H. Stierum, M. Schuemie, P. Hendriksen +4 more
2009Bioinform.42 citations Open access
Semantic Scholar
Drug prioritization using the semantic properties of a knowledge graph
Tareq B. Malas, Wytze J. Vlietstra, Roman Kudrin, Sergey Starikov +8 more
2019Scientific Reports41 citations Open access
Semantic Scholar
The CALBC Silver Standard Corpus for Biomedical Named Entities — A Study in Harmonizing the Contributions from Four Independent Named Entity Taggers
Dietrich Rebholz-Schuhmann, A. Yepes, E. V. van Mulligen, Ning Kang +7 more
2010International Conference on Language Resources and Evaluation41 citations Open access
Semantic Scholar
Extraction of chemical-induced diseases using prior knowledge and textual information
E. Pons, B. Becker, S. Akhondi, Z. Afzal +2 more
2016Database J. Biol. Databases Curation40 citations Open access
Semantic Scholar
Evaluation of a multinational, multilingual vaccine debate on Twitter.
B. Becker, H. Larson, J. Bonhoeffer, E. V. van Mulligen +2 more
2016Vaccine40 citations
Semantic Scholar
Recognition of chemical entities: combining dictionary-based and grammar-based approaches
S. Akhondi, K. Hettne, E. van der Horst, E. V. van Mulligen +1 more
2015Journal of Cheminformatics40 citations Open access
Semantic Scholar
Rewriting and suppressing UMLS terms for improved biomedical term identification
K. Hettne, E. V. van Mulligen, M. Schuemie, Bob J. A. Schijvenaars +1 more
2010Journal of Biomedical Semantics40 citations Open access
Semantic Scholar
Medical Informatics and Bioinformatics: A Bibliometric Study
J. Y. Bansard, Dietrich Rebholz-Schuhmann, G. Cameron, Dominic Clark +8 more
2007IEEE Transactions on Information Technology in Biomedicine38 citations Open access
Semantic Scholar
The eTRANSAFE Project on Translational Safety Assessment through Integrative Knowledge Management: Achievements and Perspectives
F. Pognan, T. Steger-Hartmann, Carlos Díaz, N. Blomberg +24 more
2021Pharmaceuticals36 citations Open access
Semantic Scholar
The Implicitome: A Resource for Rationalizing Gene-Disease Associations
K. Hettne, Mark Thompson, H. van Haagen, E. van der Horst +18 more
2016PLoS ONE31 citations Open access
Semantic Scholar
Applied information retrieval and multidisciplinary research: new mechanistic hypotheses in Complex Regional Pain Syndrome
K. Hettne, M. de Mos, A. G. J. de Bruijn, M. Weeber +5 more
2007Journal of Biomedical Discovery and Collaboration31 citations Open access
Semantic Scholar
Automated extraction of potential migraine biomarkers using a semantic graph
Wytze J. Vlietstra, R. Zielman, R. M. van Dongen, E. Schultes +4 more
2017Journal of Biomedical Informatics27 citations Open access
Semantic Scholar
CodeMapper: semiautomatic coding of case definitions. A contribution from the ADVANCE project
B. Becker, P. Avillach, S. Romio, E. V. van Mulligen +3 more
2017Pharmacoepidemiology and Drug Safety26 citations Open access
Semantic Scholar
Improving shared decision-making about cancer treatment through design-based data-driven decision-support tools and redesigning care paths: an overview of the 4D PICTURE project
J. Rietjens, I. Griffioen, J. Sierra-Pérez, G. Sroczynski +64 more
2024Palliative Care and Social Practice25 citations Open access
Semantic Scholar
Automatic vs. manual curation of a multi-source chemical dictionary: the impact on text mining
K. Hettne, Antony J. Williams, E. V. van Mulligen, Jos Kleinjans +2 more
2010Journal of Cheminformatics24 citations Open access
Semantic Scholar
Alignment of the UMLS semantic network with BioTop: methodology and assessment
S. Schulz, Elena Beisswanger, László van den Hoek, O. Bodenreider +1 more
2009Bioinform.24 citations Open access
Semantic Scholar
Parasitic infections related to anti-type 2 immunity monoclonal antibodies: a disproportionality analysis in the food and drug administration’s adverse event reporting system (FAERS)
Victor Pera, G. Brusselle, S. Riemann, J. Kors +5 more
2023Frontiers in Pharmacology23 citations Open access
Semantic Scholar
SYMBIOmatics: Synergies in Medical Informatics and Bioinformatics – exploring current scientific literature for emerging topics
Dietrich Rebholz-Schuhman, G. Cameron, Dominic Clark, E. V. van Mulligen +8 more
2007BMC Bioinformatics23 citations Open access
Semantic Scholar
Chemical entity recognition in patents by combining dictionary-based and statistical approaches
S. Akhondi, E. Pons, Z. Afzal, H. van Haagen +4 more
2016Database J. Biol. Databases Curation22 citations Open access
Semantic Scholar
Using predicate and provenance information from a knowledge graph for drug efficacy screening
Wytze J. Vlietstra, R. Vos, A. Sijbers, E. V. van Mulligen +1 more
2018Journal of Biomedical Semantics21 citations Open access
Semantic Scholar
Training text chunkers on a silver standard corpus: can silver replace gold?
Ning Kang, E. V. van Mulligen, J. Kors
2012BMC Bioinformatics20 citations Open access
Semantic Scholar
Gathering and Exploring Scientific Knowledge in Pharmacovigilance
Pedro Lopes, Tiago Nunes, David Campos, L. Furlong +14 more
2013PLoS ONE19 citations Open access
Semantic Scholar
Databases for knowledge discovery: Examples from biomedicine and health care
J. van Bemmel, E. V. van Mulligen, B. Mons, M. V. van Wijk +2 more
2006Int. J. Medical Informatics19 citations
Semantic Scholar
eTRANSAFE: data science to empower translational safety assessment
F. Sanz, F. Pognan, T. Steger-Hartmann, Carlos Díaz +57 more
2023Nature reviews. Drug discovery17 citations
Semantic Scholar
Finding potentially new multimorbidity patterns of psychiatric and somatic diseases: exploring the use of literature-based discovery in primary care research
R. Vos, S. Aarts, E. V. van Mulligen, J. Metsemakers +3 more
2014J. Am. Medical Informatics Assoc.17 citations Open access
Semantic Scholar
Erasmus MC Approaches to the i2b2 Challenge
Ning Kang, R. Barendse, Z. Afzal, Bharat Singh +3 more
200917 citations
Semantic Scholar
Guidelines for FAIR sharing of preclinical safety and off-target pharmacology data.
K. Briggs, Nicolas Bosc, Tima Camara, Carlos Díaz +9 more
2021ALTEX15 citations Open access
Semantic Scholar

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