Molecular transport through nano-sized multipores of lipid vesicles: a COMSOL simulation study
Md. Asaduzzamana, Shahariar Emona, Md Saif Ishtiaquea, Md. Imran Hossaina, Mohammad Abu Sayem Karalb✉, Md. Masum Billahc, Hiromitsu Takabad, Md. Khorshed Alame✉
- aDepartment of Physics, University of Barishal, Barishal, 8254, Bangladesh
- bDepartment of Physics, Bangladesh University of Engineering and Technology, Dhaka, 1000, Bangladesh. asayem221@phy.buet.ac.bd
- cDepartment of Physics, Jashore University of Science and Technology, Jashore, 7408, Bangladesh
- dDepartment of Environmental Chemistry and Chemical Engineering, School of Advanced Engineering, Kogakuin University, 2665-1 Nakano Hachioji, Tokyo, 192-0015, Japan
- eDepartment of Physics, University of Barishal, Barishal, 8254, Bangladesh. dmkalam@bu.ac.bd
- ✉Corresponding author
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Abstract
Biomembranes regulate molecular transport essential to cellular function and numerous biomedical applications, such as drug delivery and gene therapy. This study simulates molecular transport through nano-sized multipores in Giant Unilamellar Vesicles (GUVs) using COMSOL Multiphysics. We analyzed the diffusion dynamics of fluorescent probes-including Calcein, Texas-red dextran 3000 (TRD- 3k), TRD- 10k, and Alexa Fluor-labeled soybean trypsin inhibitor (AF-SBTI)-across different pore sizes, and derived rate constants using curve fitting that closely align with experimental data. Additionally, an analytical model based on Fick's law of diffusion provides further insight into transport efficiency. This approach offers a novel perspective by examining simultaneous transport through multiple nanopores, which better mimics realistic biological environments compared to traditional single-pore studies. We used COMSOL for efficiently simulating large-scale, multi-nanopore systems, particularly in biomedical applications where modeling of complex transport phenomena is essential. This work provides new insights into multipore-mediated transport, critical for optimizing nanopore-based drug delivery and advancing the understanding of cellular transport mechanisms.